View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20610_low_6 (Length: 406)

Name: NF20610_low_6
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20610_low_6
NF20610_low_6
[»] chr3 (11 HSPs)
chr3 (12-389)||(25664353-25664727)
chr3 (12-389)||(25670758-25671132)
chr3 (12-389)||(25677163-25677537)
chr3 (12-389)||(25683837-25684211)
chr3 (12-389)||(25657948-25658322)
chr3 (274-324)||(13003457-13003507)
chr3 (262-324)||(31094251-31094313)
chr3 (274-324)||(31252079-31252129)
chr3 (273-327)||(16162799-16162853)
chr3 (262-315)||(27206130-27206183)
chr3 (111-175)||(16162635-16162699)
[»] scaffold0029 (2 HSPs)
scaffold0029 (276-320)||(18860-18904)
scaffold0029 (276-320)||(43872-43916)
[»] chr2 (2 HSPs)
chr2 (276-320)||(33130844-33130888)
chr2 (276-317)||(33121104-33121145)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 25664353 - 25664727
Alignment:
Q  12 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25664353 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 25664452  T
Q  112 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25664453 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaat 25664552  T
Q  212 atataaatatttctcatgaaataacacaacttttgttatgatgatgtgtgacagaatgtactagctacttcaaaaaatcattgtttatagtgggagagat 311  Q
    |||||||| || ||||||||||||||||| |||||||   |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25664553 atataaatcttcctcatgaaataacacaatttttgtt---atgatgtgtggcagaatgcactagctacttcaaaaaatcattgtttatagtgggagagat 25664649  T
Q  312 tggtgggaatgatgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 389  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25664650 tggtgggaatgatgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 25664727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 25670758 - 25671132
Alignment:
Q  12 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25670758 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 25670857  T
Q  112 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25670858 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaat 25670957  T
Q  212 atataaatatttctcatgaaataacacaacttttgttatgatgatgtgtgacagaatgtactagctacttcaaaaaatcattgtttatagtgggagagat 311  Q
    |||||||| || ||||||||||||||||| |||||||   |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25670958 atataaatcttcctcatgaaataacacaatttttgtt---atgatgtgtggcagaatgcactagctacttcaaaaaatcattgtttatagtgggagagat 25671054  T
Q  312 tggtgggaatgatgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 389  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25671055 tggtgggaatgatgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 25671132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 25677163 - 25677537
Alignment:
Q  12 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677163 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 25677262  T
Q  112 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25677263 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaat 25677362  T
Q  212 atataaatatttctcatgaaataacacaacttttgttatgatgatgtgtgacagaatgtactagctacttcaaaaaatcattgtttatagtgggagagat 311  Q
    |||||||| || ||||||||||||||||| |||||||   |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25677363 atataaatcttcctcatgaaataacacaatttttgtt---atgatgtgtggcagaatgcactagctacttcaaaaaatcattgtttatagtgggagagat 25677459  T
Q  312 tggtgggaatgatgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 389  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677460 tggtgggaatgatgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 25677537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 25683837 - 25684211
Alignment:
Q  12 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25683837 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 25683936  T
Q  112 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25683937 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaat 25684036  T
Q  212 atataaatatttctcatgaaataacacaacttttgttatgatgatgtgtgacagaatgtactagctacttcaaaaaatcattgtttatagtgggagagat 311  Q
    |||||||| || ||||||||||||||||| |||||||   |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25684037 atataaatcttcctcatgaaataacacaatttttgtt---atgatgtgtggcagaatgcactagctacttcaaaaaatcattgtttatagtgggagagat 25684133  T
Q  312 tggtgggaatgatgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 389  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25684134 tggtgggaatgatgttctacagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 25684211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 25657948 - 25658322
Alignment:
Q  12 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25657948 atgaagaaaggagtaaattttgcattttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcat 25658047  T
Q  112 tgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaat 211  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25658048 tgagtgtacaatttgagtggtttaagaaactaaagtcattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaat 25658147  T
Q  212 atataaatatttctcatgaaataacacaacttttgttatgatgatgtgtgacagaatgtactagctacttcaaaaaatcattgtttatagtgggagagat 311  Q
    |||||||| || ||||||||||||||||| |||||||   |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||    
T  25658148 atataaatcttcctcatgaaataacacaatttttgtt---atgatgtgtgtcataatgcactagctacttcaaaaaatcattgtttatagtgggagagat 25658244  T
Q  312 tggtgggaatgatgttctgcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 389  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25658245 tggtgggaatgatgttcttcagtatatctcatctaaaaagtttacaaaaataagaaaagttgttccctatttggttga 25658322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 13003507 - 13003457
Alignment:
Q  274 agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat 324  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  13003507 agcttcttcaaaaaatcattgtttatagtgggagagattggtggaaatgat 13003457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 31094313 - 31094251
Alignment:
Q  262 acagaatgtactagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat 324  Q
    |||||||||  ||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  31094313 acagaatgtgatagcttcttcaaaaaatcgttgtttatagtgggagagattggtggaaatgat 31094251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 31252079 - 31252129
Alignment:
Q  274 agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat 324  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  31252079 agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat 31252129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 16162799 - 16162853
Alignment:
Q  273 tagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgatgtt 327  Q
    ||||| |||||||  |||||| |||||||||||||| |||||||| |||||||||    
T  16162799 tagcttcttcaaacgatcattatttatagtgggagaaattggtggaaatgatgtt 16162853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 27206130 - 27206183
Alignment:
Q  262 acagaatgtactagctacttcaaaaaatcattgtttatagtgggagagattggt 315  Q
    |||||||||  ||||| |||||||||||  |||||| |||||||||||||||||    
T  27206130 acagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggt 27206183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 16162635 - 16162699
Alignment:
Q  111 ttgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggttt 175  Q
    ||||||||||||||||| |||||||| || | ||| || ||  |||||||||||||| |||||||    
T  16162635 ttgagtgtgcaatttgactggtttaaaaatcaaaaacccttattgtgtaaaagcaaagaaggttt 16162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 18904 - 18860
Alignment:
Q  276 ctacttcaaaaaatcattgtttatagtgggagagattggtgggaa 320  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||    
T  18904 ctacttcaagaaatcattgtttatagttggagaaattggtgggaa 18860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 43916 - 43872
Alignment:
Q  276 ctacttcaaaaaatcattgtttatagtgggagagattggtgggaa 320  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||    
T  43916 ctacttcaagaaatcattgtttatagttggagaaattggtgggaa 43872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 33130888 - 33130844
Alignment:
Q  276 ctacttcaaaaaatcattgtttatagtgggagagattggtgggaa 320  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||    
T  33130888 ctacttcaagaaatcattgtttatagttggagaaattggtgggaa 33130844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 33121145 - 33121104
Alignment:
Q  276 ctacttcaaaaaatcattgtttatagtgggagagattggtgg 317  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  33121145 ctacttcaagaaatcattgtttatagttggagaaattggtgg 33121104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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