View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20610_low_9 (Length: 327)
Name: NF20610_low_9
Description: NF20610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20610_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 41695719 - 41695542
Alignment:
| Q |
85 |
acaaaaagttgaatgcatatttgattggaaggcttggtgtgacatatacattagaggccactcattttctataaattaaattaaagcatgaaaatgtaca |
184 |
Q |
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| T |
41695719 |
acaaaaagcagaatacatatttgattggaaggcttagcgtgacagatatattagatgtcactcattttctataaattaaattataacatgaaaatgtata |
41695620 |
T |
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| Q |
185 |
ttatatatgtgaaatgttattttgttatcttattaacagtgaaattgtttaactgaacacattctttgttttgatgca |
262 |
Q |
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| T |
41695619 |
ttatatatgtgaaatgttattgtgttatcttattaatagtgaaattgtttaaacgagcacattctttgttttgatgca |
41695542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 41698134 - 41698042
Alignment:
| Q |
85 |
acaaaaagttgaatgcatatttgattggaaggcttggtgtgacatatacattagaggccactcattttctataaattaaattaaagcatgaaa |
177 |
Q |
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| T |
41698134 |
acaaaaagttgaatgcatatttgattggaaggcttgatgtgacatatacattagaggccactcatttactataaattaaattaaagcatgaaa |
41698042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 41698043 - 41697965
Alignment:
| Q |
235 |
aactgaacacattctttgttttgatgcatgtannnnnnnc-ctccacataagttgatttaacaggtgcaacaccttagt |
312 |
Q |
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| T |
41698043 |
aactgaacacattctttgttttgatgcatgtatttttttttctccacataagttgatttaacaggtgcaacaccttagt |
41697965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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