View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_high_17 (Length: 250)
Name: NF20611_high_17
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 2590345 - 2590590
Alignment:
| Q |
11 |
agaaaattgctagaataaagttgatggaacgtcactttagggttagatggagatatgggtcctacatgcaggttgtaaatgtcgacttcagttccctcag |
110 |
Q |
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| T |
2590345 |
agaaaattgctagaataaagttgatggaacgtcactttagggttagatggagatatgggtcctacatgcaggttgtaaatgtcgacttcagttccctcag |
2590444 |
T |
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| Q |
111 |
ttttaaaagaaggaaagatagaaagagaaagagataactattgca------ttgcacttgcacttgcacacatacactgatatatgaatgaaggtacaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2590445 |
ttttaaaagaaggaaagatagaaagagaaagagataactattgcattgcacttgcacttgcacttgcacacatacactgatatatgaatgaaggtacaat |
2590544 |
T |
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| Q |
205 |
ttactaaacaaaaagagacaggaatagaacaagagaaagatgggtc |
250 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2590545 |
ttactaaacaaaaagagacaggcatagaacaagagaaagatgggtc |
2590590 |
T |
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