View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_high_21 (Length: 240)
Name: NF20611_high_21
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27084609 - 27084813
Alignment:
| Q |
1 |
ttgtgcatgaagtaatgggtgccaatcaagtnnnnnnngtgcttagttgtgatttgtgtaacattaatacttgcccctaagcatataaatttcaatctac |
100 |
Q |
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| T |
27084609 |
ttgtgcatgaagtaatgggtgccaatcaagtaaaaaaagtgcttagt-gtgatttgtgtaacattaata--------------tataaatttcaatctac |
27084693 |
T |
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| Q |
101 |
aaaaaataaagtagcttgcacacaaagatcggtggaaaatatttaccaaaatttccgatgcttttgactgtgagcggtgaattccattgctccattgcta |
200 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27084694 |
aaaa-ataaagtagcttgcacgcaaagatcggtggaaaatatttaccaaaatttccgatgcttttgattgtgagcggtgaattccattgctccattgcta |
27084792 |
T |
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| Q |
201 |
gatcgaacacatggaatcatc |
221 |
Q |
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| T |
27084793 |
gatcgaacacatggaatcatc |
27084813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27193692 - 27193488
Alignment:
| Q |
1 |
ttgtgcatgaagtaatgggtgccaatcaagtnnnnnnngtgcttagttgtgatttgtgtaacattaatacttgcccctaagcatataaatttcaatctac |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
27193692 |
ttgtgcatgaagtaatgggtgccaatcaagtaaaaaaagtgcttagt-gtgatttgtgtaacattaata--------------tataaatttcaatctac |
27193608 |
T |
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| Q |
101 |
aaaaaataaagtagcttgcacacaaagatcggtggaaaatatttaccaaaatttccgatgcttttgactgtgagcggtgaattccattgctccattgcta |
200 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27193607 |
aaaaa-taaagtagcttgcacgcaaagatcggtggaaaatatttaccaaaatttccgatgcttttgattgtgagcggtgaattccattgctccattgcta |
27193509 |
T |
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| Q |
201 |
gatcgaacacatggaatcatc |
221 |
Q |
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| T |
27193508 |
gatcgaacacatggaatcatc |
27193488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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