View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_1 (Length: 683)
Name: NF20611_low_1
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 46 - 667
Target Start/End: Complemental strand, 5932179 - 5931564
Alignment:
| Q |
46 |
ttgatagatattatttcaattctctttatttttgtgagaattattacgtacaattttttgttttaaagtcaatcaaactgaccaacatgttgggagagtt |
145 |
Q |
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| T |
5932179 |
ttgatagatattatttcaattctctttatttttgtgagaattattacgtacaattttttgttttaaagtcaatcaaactgaccaacatgttgggagagtt |
5932080 |
T |
|
| Q |
146 |
gacatgacaacatgtctttcctagaattcgagtttgattcctagagtcgtcaattctgagggtagcccaaccctagtnnnnnnnttactagatgtttgtt |
245 |
Q |
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| T |
5932079 |
gacatgagaacatgtctttcctagaatttgagtttgattcctagagtcgtcaattcggatggtagcccaaccctagtaaaaaaattactagatgttcgtt |
5931980 |
T |
|
| Q |
246 |
gacgacttgatgattagttccatagcatgtccaaaggtccaaagccgagaggataacatgaagcacatacacaaacacaacaaaaacacttaaacatgga |
345 |
Q |
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| T |
5931979 |
ggcgacgtaaagattagtgccatagcatgtccaaagggccaaagtcgcgaggataacatgaagcacgtacacaaacacaacaaaaacacttaaacatgga |
5931880 |
T |
|
| Q |
346 |
catcgatcaattgaagnnnnnnntaacataattcaatgtaatcacacaccagacaaactttcaatcagaagtgtcggtgttattacaatgttgtaacgta |
445 |
Q |
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| T |
5931879 |
catcgat-aatctaa-aaaaaaaaaacataattcaatgtaatcacacaccagacaaacttttaatcagaagtgtcggtgttattacaatgttgtaaggta |
5931782 |
T |
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| Q |
446 |
aactactactcatcaaat----------aataataaaaattgggtgaaggatgaaaataagggttgcattattggatccatcaaagattcaaggtgttac |
535 |
Q |
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| T |
5931781 |
aactactacccatgaaatgaaaaaaaaaaaaaaaaaaaattgggtgaaggatgaaaataagggttgcattattggatccatcaaagattcaagttg---- |
5931686 |
T |
|
| Q |
536 |
aaaaatatcataaaaacaagtcataagattcacgtttcattattaaaattcatgtcactttcaaagatgagatggcaaagttgaataataataacaaaag |
635 |
Q |
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| T |
5931685 |
----------taaaaaccagtcataagattcacgtttcattattaaaattcatgtcactttcaatgatgagatggcaaagttgaataataataacaaaag |
5931596 |
T |
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| Q |
636 |
tactattgtgtctcatattgtggcttaaaatg |
667 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
5931595 |
tactcttgtgtctcatattgtggcttaaaatg |
5931564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 5932293 - 5932331
Alignment:
| Q |
19 |
ttggatttgtatgattcagtgcttattttgatagatatt |
57 |
Q |
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| T |
5932293 |
ttggatttgtatgattcagtgcttattttgatagatatt |
5932331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 36286531 - 36286568
Alignment:
| Q |
391 |
acaccagacaaactttcaatcagaagtgtcggtgttat |
428 |
Q |
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| T |
36286531 |
acaccagacacactttcgatcagaagtgtcggtgttat |
36286568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 34739046 - 34739010
Alignment:
| Q |
387 |
tcacacaccagacaaactttcaatcagaagtgtcggt |
423 |
Q |
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| T |
34739046 |
tcacacaccaaacacactttcaatcagaagtgtcggt |
34739010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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