View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20611_low_10 (Length: 340)

Name: NF20611_low_10
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20611_low_10
NF20611_low_10
[»] chr6 (3 HSPs)
chr6 (19-228)||(12425663-12425873)
chr6 (83-132)||(32406993-32407042)
chr6 (232-269)||(12425923-12425960)
[»] chr5 (3 HSPs)
chr5 (52-129)||(6423993-6424070)
chr5 (83-160)||(42042143-42042220)
chr5 (77-133)||(33408169-33408225)
[»] chr8 (1 HSPs)
chr8 (83-148)||(30525261-30525326)
[»] chr4 (3 HSPs)
chr4 (60-161)||(36165839-36165940)
chr4 (90-148)||(54137261-54137319)
chr4 (96-158)||(582290-582352)
[»] chr7 (2 HSPs)
chr7 (71-131)||(8745849-8745909)
chr7 (43-129)||(36496221-36496307)
[»] chr3 (3 HSPs)
chr3 (71-156)||(12369762-12369847)
chr3 (89-130)||(20490964-20491005)
chr3 (97-161)||(22312323-22312387)
[»] chr2 (1 HSPs)
chr2 (113-161)||(36201980-36202028)
[»] chr1 (1 HSPs)
chr1 (75-135)||(13899937-13899997)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 12425663 - 12425873
Alignment:
Q  19 aagttattggtcaggtttcgaagttgttcgatttataaatttgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  12425663 aagttattggtcaggtttcgaagttgttcgatttataaatttgtttcagcagcctcatcatttaagctaatttttgtgatgagattcaatcccatttaac 12425762  T
Q  119 atggtatcagagtcgagttgagtattgcaaagtggaaattggaacctgaaaccaaaagac-nnnnnnnnnnngtgtccagagttcaaacctcaatccttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  12425763 atggtatcagagtcgagttgagtattgcaaagtggaaattggaacctgaaaccaaaagactgtttttttttggtgtccagagttcaaacctcaatccttg 12425862  T
Q  218 catatattatg 228  Q
    |||||||||||    
T  12425863 catatattatg 12425873  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 32407042 - 32406993
Alignment:
Q  83 agctagtttttgtgatgagattcaatctcatttaacatggtatcagagtc 132  Q
    |||||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  32407042 agctagcttttgggatgagatccaaactcatttaacatggtatcagagtc 32406993  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 12425923 - 12425960
Alignment:
Q  232 gtttgtcggaggtataaatgtttttaacaaaggctttt 269  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  12425923 gtttgtaggagctataaatgtttttaacaaaggctttt 12425960  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 6423993 - 6424070
Alignment:
Q  52 tataaatttgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcaga 129  Q
    ||||||| ||||| || | | ||||| |||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  6423993 tataaatatgtttgagtatcatcatcttttaagctagtttttaggatgagattcaatcttatttaacatggtatcaga 6424070  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 42042143 - 42042220
Alignment:
Q  83 agctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaattgg 160  Q
    |||||||||||| |||||||| ||| || |||||||||||||||||||||| ||| || ||||| | |||| ||||||    
T  42042143 agctagtttttgggatgagatccaaacttatttaacatggtatcagagtcgggttaaggattgcgatgtgggaattgg 42042220  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 33408225 - 33408169
Alignment:
Q  77 catttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcg 133  Q
    ||||| |||||  ||||| |||||||||||| |||||||||||||||||||||||||    
T  33408225 catttgagctaacttttgggatgagattcaaactcatttaacatggtatcagagtcg 33408169  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 30525261 - 30525326
Alignment:
Q  83 agctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaa 148  Q
    |||||| ||||| |||||||| ||| | ||||||||||||||||||||||||||| || |||||||    
T  30525261 agctagcttttgggatgagatacaagcacatttaacatggtatcagagtcgagttaaggattgcaa 30525326  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 36165940 - 36165839
Alignment:
Q  60 tgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaattg 159  Q
    ||||| |||| ||||||| |||||||||  ||||| |||||||| ||| ||||||||| |||||||| ||| || ||| || |||| || ||||||||||    
T  36165940 tgtttgagcaccctcatcctttaagctaacttttgcgatgagatccaaactcatttaatatggtatcggagccgggttaagaattgtaatgtggaaattg 36165841  T
Q  160 ga 161  Q
    ||    
T  36165840 ga 36165839  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 54137319 - 54137261
Alignment:
Q  90 ttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaa 148  Q
    ||||| |||||||||||| |||| |||||||||||||||||||| ||| || |||||||    
T  54137319 ttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaa 54137261  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 582290 - 582352
Alignment:
Q  96 gatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaatt 158  Q
    ||||||||||||  |||||||||||||||||||||||| ||| |  ||||||| |||| ||||    
T  582290 gatgagattcaagttcatttaacatggtatcagagtcgggtttaagattgcaatgtgggaatt 582352  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 8745909 - 8745849
Alignment:
Q  71 cctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagt 131  Q
    ||||||| |||||||||  ||||| |||||||| ||| ||||||||||||| |||||||||    
T  8745909 cctcatcctttaagctaacttttgggatgagatccaagctcatttaacatgatatcagagt 8745849  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 36496307 - 36496221
Alignment:
Q  43 tgttcgatttataaatttgtttcagcaacctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcaga 129  Q
    |||| ||| ||||||| |||||  ||| |||||||  || |||||| ||||| |||||||||||| | ||||| |||||||||||||    
T  36496307 tgttggatgtataaatctgtttaggcaccctcatccattgagctagcttttgggatgagattcaagcccatttcacatggtatcaga 36496221  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 12369762 - 12369847
Alignment:
Q  71 cctcatcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaa 156  Q
    ||||||||||| ||||| ||||||  ||||||||||| |||||| |||||| |||  |||| | ||| |  |||||||||||||||    
T  12369762 cctcatcatttgagctaatttttggaatgagattcaagctcattcaacatgatatttgagttgggttaacaattgcaaagtggaaa 12369847  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 20490964 - 20491005
Alignment:
Q  89 tttttgtgatgagattcaatctcatttaacatggtatcagag 130  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  20490964 tttttgggatgagatccaagctcatttaacatggtatcagag 20491005  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 22312323 - 22312387
Alignment:
Q  97 atgagattcaatctcatttaacatggtatcagagtcgagttgagtattgcaaagtggaaattgga 161  Q
    ||||||||||| |  |||||||||||||||||||||| ||| |  ||||||| ||| ||||||||    
T  22312323 atgagattcaaacctatttaacatggtatcagagtcgggttaaagattgcaatgtgcaaattgga 22312387  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 36201980 - 36202028
Alignment:
Q  113 tttaacatggtatcagagtcgagttgagtattgcaaagtggaaattgga 161  Q
    ||||||||||||||||||||| ||| || ||| ||| ||||||||||||    
T  36201980 tttaacatggtatcagagtcgggttaagaattacaatgtggaaattgga 36202028  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 13899937 - 13899997
Alignment:
Q  75 atcatttaagctagtttttgtgatgagattcaatctcatttaacatggtatcagagtcgag 135  Q
    ||||||| |||||  ||||  ||| |||||||||||||||||||||| ||||| |||||||    
T  13899937 atcatttgagctatcttttaggataagattcaatctcatttaacatgatatcaaagtcgag 13899997  T

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