View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20611_low_11 (Length: 329)

Name: NF20611_low_11
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20611_low_11
NF20611_low_11
[»] chr5 (3 HSPs)
chr5 (100-313)||(7810349-7810560)
chr5 (246-313)||(23941681-23941748)
chr5 (104-137)||(23941539-23941572)
[»] chr2 (5 HSPs)
chr2 (154-313)||(1026569-1026728)
chr2 (102-307)||(35148639-35148844)
chr2 (104-235)||(14657152-14657283)
chr2 (246-306)||(22593564-22593624)
chr2 (100-134)||(42406817-42406851)
[»] chr3 (5 HSPs)
chr3 (154-313)||(8311094-8311247)
chr3 (1-49)||(37413877-37413925)
chr3 (258-313)||(53611775-53611830)
chr3 (100-134)||(15480266-15480300)
chr3 (100-137)||(23420916-23420953)
[»] chr1 (2 HSPs)
chr1 (154-291)||(50448478-50448615)
chr1 (100-289)||(5196495-5196684)
[»] chr7 (1 HSPs)
chr7 (5-49)||(16806868-16806912)
[»] chr4 (2 HSPs)
chr4 (1-49)||(23005597-23005645)
chr4 (100-235)||(54356046-54356181)
[»] scaffold0167 (1 HSPs)
scaffold0167 (100-136)||(35129-35165)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 100 - 313
Target Start/End: Original strand, 7810349 - 7810560
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaaagtaaccaaaatcttgaaaccaccaaaaagccacctgatccccaacaaccccccaccccaaagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||  | |||||||||    
T  7810349 gtgcaatgagctctgagtttgtcttctccgctcaaagtaaccaaaatcttgaaaccactaaaaagtcacccgatccccaacagcccc--aacccaaagat 7810446  T
Q  200 ctcttttcgtgataagctcctaggaccctctcaagatatcccaatacgtgaaaaagaggacatgattggaaaaaagcttgtccgtatcgaacatgaaaat 299  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7810447 ttcttttcgtgataagctcctaggaccctctcaagaaatcccaatacgtgaaaaagaggacatgattggaaaaaaacttgtccgtatcgaacatgaaaat 7810546  T
Q  300 ggaaaccgtcttct 313  Q
    ||||||||||||||    
T  7810547 ggaaaccgtcttct 7810560  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 23941681 - 23941748
Alignment:
Q  246 cgtgaaaaagaggacatgattggaaaaaagcttgtccgtatcgaacatgaaaatggaaaccgtcttct 313  Q
    ||||||||| | |||||||||  ||| || |||||||| ||||| ||||||||||||||||| |||||    
T  23941681 cgtgaaaaacatgacatgattcaaaagaaacttgtccgcatcgagcatgaaaatggaaaccggcttct 23941748  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 23941539 - 23941572
Alignment:
Q  104 aatgagctctgagtttgtcttctccgctcaaagt 137  Q
    ||||||||||||||||||||||||||| ||||||    
T  23941539 aatgagctctgagtttgtcttctccgcccaaagt 23941572  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 313
Target Start/End: Original strand, 1026569 - 1026728
Alignment:
Q  154 ccaccaaaaagccacctgatccccaacaaccccccaccccaaagatctcttttcgtgataagctcctaggaccctctcaagatatcccaatacgtgaaaa 253  Q
    |||||||||| || |||||||| ||| | || || ||||||||||||||||| || || || |||||||| ||||| ||||| | || ||| || |||||    
T  1026569 ccaccaaaaaaccgcctgatccacaatagcctccaaccccaaagatctctttccgcgacaaactcctaggcccctcccaagaaaccctaatccgagaaaa 1026668  T
Q  254 agaggacatgattggaaaaaagcttgtccgtatcgaacatgaaaatggaaaccgtcttct 313  Q
    |||||||||||| | | ||||||||||||||||||||||||| |||||||| ||||||||    
T  1026669 agaggacatgatcgaacaaaagcttgtccgtatcgaacatgagaatggaaatcgtcttct 1026728  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 102 - 307
Target Start/End: Complemental strand, 35148844 - 35148639
Alignment:
Q  102 gcaatgagctctgagtttgtcttctccgctcaaagtaaccaaaatcttgaaaccaccaaaaagccacctgatccccaacaaccccccaccccaaagatct 201  Q
    |||||||||||||||||||| ||||| |||||| || |||| || ||| || ||||||||||||||||||| ||| | | ||  ||  |||||||||| |    
T  35148844 gcaatgagctctgagtttgttttctctgctcaaggtgaccacaaccttcaagccaccaaaaagccacctgaccccaagccacatccttccccaaagattt 35148745  T
Q  202 cttttcgtgataagctcctaggaccctctcaagatatcccaatacgtgaaaaagaggacatgattggaaaaaagcttgtccgtatcgaacatgaaaatgg 301  Q
    ||||||||||||| ||||| ||||| || ||||| | |   || ||||||||||| |||||||| |  ||||||||| |||| || |||||||| |||||    
T  35148744 cttttcgtgataaactccttggaccttcacaagaaacctttattcgtgaaaaagaagacatgatcgagaaaaagcttttccgcattgaacatgagaatgg 35148645  T
Q  302 aaaccg 307  Q
     |||||    
T  35148644 taaccg 35148639  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 14657283 - 14657152
Alignment:
Q  104 aatgagctctgagtttgtcttctccgctcaaagtaaccaaaatcttgaaaccaccaaaaagccacctgatccccaacaacccccca-ccccaaagatctc 202  Q
    |||||||| |||||| || ||||| ||||  ||| |||| || ||| || |||||||||| ||||| ||||| || ||| || ||| ||||||||||||     
T  14657283 aatgagctttgagttcgttttctctgctctgagtgaccacaaccttcaagccaccaaaaaaccacccgatccaca-caagccaccatccccaaagatctt 14657185  T
Q  203 ttttcgtgataagctcctaggaccctctcaaga 235  Q
    ||| ||||| || ||||||||||||||||||||    
T  14657184 tttccgtgacaaactcctaggaccctctcaaga 14657152  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 22593564 - 22593624
Alignment:
Q  246 cgtgaaaaagaggacatgattggaaaaaagcttgtccgtatcgaacatgaaaatggaaacc 306  Q
    ||||||||| | ||||||||||  ||||||||||| || ||||||||||||||||||||||    
T  22593564 cgtgaaaaacaagacatgattgagaaaaagcttgttcgcatcgaacatgaaaatggaaacc 22593624  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 42406851 - 42406817
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaa 134  Q
    |||||||||||||||||||||||||||||||||||    
T  42406851 gtgcaatgagctctgagtttgtcttctccgctcaa 42406817  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 154 - 313
Target Start/End: Complemental strand, 8311247 - 8311094
Alignment:
Q  154 ccaccaaaaagccacctgatccccaacaaccccccaccccaaagatctcttttcgtgataagctcctaggaccctctcaagatatcccaatacgtgaaaa 253  Q
    |||||||||| || |||||||| ||||| || || ||||||||||||||||| ||||| ||      ||| ||||| ||||| | || ||| || |||||    
T  8311247 ccaccaaaaaaccgcctgatccacaacagcctccaaccccaaagatctctttccgtgacaa------aggcccctcccaagaaaccctaatccgagaaaa 8311154  T
Q  254 agaggacatgattggaaaaaagcttgtccgtatcgaacatgaaaatggaaaccgtcttct 313  Q
    |||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||    
T  8311153 agaggacatgatcgaaaaaaagcttgtctgtatcgaacatgagaatggaaaccgtcttct 8311094  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37413877 - 37413925
Alignment:
Q  1 tacatagatgaatgtgtgtttcttttatgatcatcgtgatctttttata 49  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37413877 tacatagatgaatgtgtgtttcttttatgattatcgtgatctttttata 37413925  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 53611830 - 53611775
Alignment:
Q  258 gacatgattggaaaaaagcttgtccgtatcgaacatgaaaatggaaaccgtcttct 313  Q
    ||||||||||  ||||| |||||||| || || |||||||||||||||||||||||    
T  53611830 gacatgattgagaaaaaacttgtccgcattgagcatgaaaatggaaaccgtcttct 53611775  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 15480300 - 15480266
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaa 134  Q
    |||||||||||||||||||||||||||| ||||||    
T  15480300 gtgcaatgagctctgagtttgtcttctcagctcaa 15480266  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 23420916 - 23420953
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaaagt 137  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  23420916 gtgcaatgagctatgattttgtcttctccgctcaaagt 23420953  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 50448478 - 50448615
Alignment:
Q  154 ccaccaaaaagccacctgatccccaacaacccccca-ccccaaagatctcttttcgtgataagctcctaggaccctctcaagatatcccaatacgtgaaa 252  Q
    ||||||||||||||||||| ||||| || ||||||| |||||||||||||||| ||||| || ||| | |||||||||||||| |||| ||  |||| ||    
T  50448478 ccaccaaaaagccacctgaccccca-cacccccccaaccccaaagatctctttccgtgacaaactcttgggaccctctcaagaaatccaaactcgtgcaa 50448576  T
Q  253 aagaggacatgattggaaaaaagcttgtccgtatcgaac 291  Q
    ||||||||||||| |  || || ||||||||||| ||||    
T  50448577 aagaggacatgatcgagaagaaccttgtccgtattgaac 50448615  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 289
Target Start/End: Complemental strand, 5196684 - 5196495
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaaagtaaccaaaatcttgaaaccaccaaaaagccacctgatccccaacaaccccccaccccaaagat 199  Q
    |||||||||||||| ||||||||||||||||||||||| | |  || ||  ||||||||||||| ||||| || | |||  | ||  | ||||| ||| |    
T  5196684 gtgcaatgagctctcagtttgtcttctccgctcaaagtgatctcaacctgcaaaccaccaaaaaaccacccgacctccataagccttcaacccctaagct 5196585  T
Q  200 ctcttttcgtgataagctcctaggaccctctcaagatatcccaatacgtgaaaaagaggacatgattggaaaaaagcttgtccgtatcga 289  Q
     || ||||||||||| ||   | ||||||| ||||| |||| ||| ||||||| |||||||||||||| ||| || ||||| ||||||||    
T  5196584 ttcatttcgtgataaactttgaagaccctcccaagaaatccaaatccgtgaaagagaggacatgattgaaaagaaacttgtacgtatcga 5196495  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 16806912 - 16806868
Alignment:
Q  5 tagatgaatgtgtgtttcttttatgatcatcgtgatctttttata 49  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  16806912 tagatgaatgtgtgtttcttttatgatcatcatgatctttttata 16806868  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23005645 - 23005597
Alignment:
Q  1 tacatagatgaatgtgtgtttcttttatgatcatcgtgatctttttata 49  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  23005645 tacatagctgaatgtgtgtttcttttatgatcatcatgatctttttata 23005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 54356046 - 54356181
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaaagtaaccaaaatcttgaaaccaccaaaaagccacctgatccccaacaaccccccaccccaaagat 199  Q
    |||| ||||||||| ||||||| ||||| ||||||||| | || || ||| |||| || ||||| |||||  |||   || | ||||| |||||||||||    
T  54356046 gtgctatgagctctaagtttgttttctctgctcaaagtgatcataaccttcaaactacaaaaaaaccaccatatctaaaaaagcccccaaccccaaagat 54356145  T
Q  200 ctcttttcgtgataagctcctaggaccctctcaaga 235  Q
    ||| || ||| |||| |||||||| ||||| |||||    
T  54356146 ctccttccgttataaactcctaggcccctcccaaga 54356181  T

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Target: scaffold0167 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 35129 - 35165
Alignment:
Q  100 gtgcaatgagctctgagtttgtcttctccgctcaaag 136  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35129 gtgcaatgagctctgactttgtcttctccgctcaaag 35165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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