View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_12 (Length: 319)
Name: NF20611_low_12
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 29053710 - 29053403
Alignment:
| Q |
1 |
tagatctgttgggacatttgctataaggtcttgagtctgaggggtgtgtgttaagagtctcacattggatgaaacgttctacagtttcaaactatattcc |
100 |
Q |
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| T |
29053710 |
tagatctgctgggacatttgctataaggtcttgagtgtgaggggtgtgtgttaaaagtctcacattggatgaaacgttctacagtttcaaactatattcc |
29053611 |
T |
|
| Q |
101 |
tagattccaatgacacaaaaaccaaattgcacattttcaaagtgtaaattaaaaattagcctttgtattattattgtttgaccccatttgaaaactttag |
200 |
Q |
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| T |
29053610 |
tagattccaatatcacaaaaaccaaattgcacattttcaaagtgtaaattaaaaattagcctttgtattattattgtttaaccccatttgaaaactttag |
29053511 |
T |
|
| Q |
201 |
cataagaacacaattgattatttcttgtccttctttataagtcctccttcaaattttcaacttgattaattatttctttaccataatacacctaattact |
300 |
Q |
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||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053510 |
cataagaacacaatttattatttcttgtccttttttataaatcctccttcaaattttcaacttgattaattatttctttaccataatacacctaattact |
29053411 |
T |
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| Q |
301 |
ttgtctct |
308 |
Q |
| |
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|||||||| |
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| T |
29053410 |
ttgtctct |
29053403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 12971646 - 12971600
Alignment:
| Q |
234 |
tttataagtcctccttcaaattttcaacttgattaattatttcttta |
280 |
Q |
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| T |
12971646 |
tttataagacccccttcaaattttcaactcaattaattatttcttta |
12971600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 10311142 - 10311196
Alignment:
| Q |
248 |
ttcaaattttcaacttgattaattatttctttaccataatacacctaattacttt |
302 |
Q |
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|||||||||| || | ||||||| ||||||||||| |||||||||||||||||| |
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| T |
10311142 |
ttcaaatttttaaatgcattaattctttctttaccaaaatacacctaattacttt |
10311196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 44767755 - 44767808
Alignment:
| Q |
249 |
tcaaattttcaacttgattaattatttctttaccataatacacctaattacttt |
302 |
Q |
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|||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||| |
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| T |
44767755 |
tcaaattttcaactgcattaattatctctctactataatacccctaattacttt |
44767808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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