View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_15 (Length: 300)
Name: NF20611_low_15
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 42186879 - 42187138
Alignment:
| Q |
18 |
taaacaagttcaaattctcatatttatgtaagaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccacacta |
117 |
Q |
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| T |
42186879 |
taaacaagttcaaattctcatatttatgtaagaatcctaattggttaatttctaaattgtaaaggtgaactatgtgaatgctcatgccacatccacacta |
42186978 |
T |
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| Q |
118 |
gccggtgacttagctgaggttaatgcaatcaaacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttacttcaa |
217 |
Q |
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| T |
42186979 |
gccggtgacttagctgaggttaatgcaatcaaacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttgcttcaa |
42187078 |
T |
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| Q |
218 |
aatatttcagaatcccaacaacatcttattgatcttgaagcttatcattatagtttattc |
277 |
Q |
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| T |
42187079 |
aatatttcagaatcccaacaacatcttattgatcttgaagcttatcattatagtttattc |
42187138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 49 - 277
Target Start/End: Original strand, 42203961 - 42204189
Alignment:
| Q |
49 |
gaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccacactagccggtgacttagctgaggttaatgcaatca |
148 |
Q |
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| T |
42203961 |
gaatcctaattgtctacttttcaaattgtaaaggtgaactatgtaaatgctcacgccacatcatcactgatcggtgacttagctgaggttaatgcaatca |
42204060 |
T |
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| Q |
149 |
aacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttacttcaaaatatttcagaatcccaacaacatcttattg |
248 |
Q |
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| T |
42204061 |
aacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggtaagaaatttatttgcttcaaaatatttcagaatcccaacaacatcttattg |
42204160 |
T |
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| Q |
249 |
atcttgaagcttatcattatagtttattc |
277 |
Q |
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| T |
42204161 |
atcttgaagcttatcattatagtttattc |
42204189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 42196704 - 42196853
Alignment:
| Q |
49 |
gaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccacactagccggtgacttagctgaggttaatgcaatca |
148 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||| |
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| T |
42196704 |
gaatcctaattggttaatttctaaattgtaaaggtgaactatgtgaatgctcatgccacatccacggtagctggtgatttggctgaggtttatgcaatca |
42196803 |
T |
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| Q |
149 |
aacaagtttttaaggacacatcggaattgaaaatgaacgggactaaggta |
198 |
Q |
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|||| ||||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
42196804 |
aacaggttttcaaggatacatcagaattgaaaatgaacggaactaaggta |
42196853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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