View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20611_low_16 (Length: 292)
Name: NF20611_low_16
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 48 - 276
Target Start/End: Original strand, 32753930 - 32754159
Alignment:
| Q |
48 |
tctataaatgtaaaagtcaagccactggctagtagatagtacatttttctctaaatataatttgcatttacaaaggnnnnnnnnctttgtccctaagcat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
32753930 |
tctataaatgtaaaagtcaagccactggctagtagatagtacatttttctctaaatataatttgcatttagaaaggaaaaaaa-ctttgtccctaagcat |
32754028 |
T |
|
| Q |
148 |
gtacattatctgagnnnnnnn--ttgtattaagttgagtttgagctgaaaaaatttcatcacaggcttgaattgagcttcgatgaaccaaatcttatcaa |
245 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32754029 |
gcacattatctgaagaaaaaaaattgtattaagttgagtttgagctgaaaaaatttcatcacaggcttgaattgagcttcgatgaaccaaatcttatcaa |
32754128 |
T |
|
| Q |
246 |
attaaaccaatttctacttcgctcgattcat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32754129 |
gttaaaccaatttctacttcgctcgattcat |
32754159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 32753893 - 32753921
Alignment:
| Q |
7 |
gaattaattaatactatatttgtttatat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32753893 |
gaattaattaatactatatttgtttatat |
32753921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University