View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20611_low_17 (Length: 253)

Name: NF20611_low_17
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20611_low_17
NF20611_low_17
[»] chr8 (1 HSPs)
chr8 (1-235)||(29053729-29053969)
[»] chr3 (2 HSPs)
chr3 (1-55)||(21916457-21916511)
chr3 (3-53)||(38036009-38036059)
[»] chr7 (4 HSPs)
chr7 (1-53)||(41484951-41485003)
chr7 (1-53)||(7971328-7971380)
chr7 (20-60)||(11469689-11469729)
chr7 (1-41)||(31632684-31632724)
[»] chr2 (3 HSPs)
chr2 (1-53)||(26529072-26529124)
chr2 (21-51)||(26010511-26010541)
chr2 (21-53)||(2333363-2333395)
[»] chr1 (2 HSPs)
chr1 (1-53)||(347338-347390)
chr1 (1-53)||(25437365-25437417)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 29053729 - 29053969
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggtaatgagtaccccacttatattcaggacatcaacg------tcttaac 94  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||      |||||||    
T  29053729 tcttagaatttcggttgaatttaactcaaccttacaaaactaacttgtaaggtgatgagtaccccacttatattcaggacatcaacgtgggactcttaac 29053828  T
Q  95 aaaaaccttggtttggaacataggattcctagctgaagaaaacaaggaaacagttgatta-nnnnnnnagccattagaaatgtgtcatttgtatcataga 193  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  29053829 aaaaa-cttggttaggaacataggattcctagctgaagaaaacaaggaaacagttgattattttttttagccattagaaatgtgtcatttgtatcataga 29053927  T
Q  194 cataagtgtgttccaagtttacatttttgaagggtcagatat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29053928 cataagtgtgttccaagtttacatttttgaagggtcagatat 29053969  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21916511 - 21916457
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggtaa 55  Q
    ||||||||||| ||||| | ||||||||||||||||||||||| || ||||||||    
T  21916511 tcttagaatttaggttggacttaactcaaccttacaaaactgatttataaggtaa 21916457  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 38036009 - 38036059
Alignment:
Q  3 ttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggt 53  Q
    ||||||||| ||||||| |||||||||| ||||||||| ||||||||||||    
T  38036009 ttagaatttgggttgaacttaactcaactttacaaaaccgacttgtaaggt 38036059  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41484951 - 41485003
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggt 53  Q
    ||||||||||| |||| ||| ||||||||||  ||||||||||||||||||||    
T  41484951 tcttagaatttgggttaaatctaactcaaccacacaaaactgacttgtaaggt 41485003  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7971380 - 7971328
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggt 53  Q
    |||||| ||||  ||||||  ||||||||| ||||||||||||||||||||||    
T  7971380 tcttaggatttgtgttgaacctaactcaactttacaaaactgacttgtaaggt 7971328  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 11469729 - 11469689
Alignment:
Q  20 tttaactcaaccttacaaaactgacttgtaaggtaatgagt 60  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  11469729 tttaaatcatccttacaaaaccgacttgtaaggtaatgagt 11469689  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31632724 - 31632684
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaact 41  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  31632724 tcttagaatttgggttggatttaactcaactttacaaaact 31632684  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26529072 - 26529124
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggt 53  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||| |||||||    
T  26529072 tcttagaatttgggttgaacttaactcaaccctataaaactgactagtaaggt 26529124  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 26010541 - 26010511
Alignment:
Q  21 ttaactcaaccttacaaaactgacttgtaag 51  Q
    |||||||||||||||||||||||||||||||    
T  26010541 ttaactcaaccttacaaaactgacttgtaag 26010511  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 2333363 - 2333395
Alignment:
Q  21 ttaactcaaccttacaaaactgacttgtaaggt 53  Q
    |||||||||||||||||||||| ||||||||||    
T  2333363 ttaactcaaccttacaaaactggcttgtaaggt 2333395  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 347390 - 347338
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggt 53  Q
    ||||||||||| |||||||  ||||||||||||||||||||| ||| ||||||    
T  347390 tcttagaatttgggttgaacctaactcaaccttacaaaactggcttctaaggt 347338  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25437417 - 25437365
Alignment:
Q  1 tcttagaatttcggttgaatttaactcaaccttacaaaactgacttgtaaggt 53  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||| |||||||    
T  25437417 tcttagaatttgggttgaacttaactcaaccctataaaactgactagtaaggt 25437365  T

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