View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_22 (Length: 240)
Name: NF20611_low_22
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_22 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 486884 - 487105
Alignment:
| Q |
19 |
actaggtgcttactatgtgccaactattgtagtagtgttagcttcaccttcacttcctgcaaatattctggccattccaaagtctgaaatctttggcttc |
118 |
Q |
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| T |
486884 |
actaggtgcttactatgtgccaactattgtagtagtgttagcttcaccttcacttcctgcaaatattctggccattccaaagtctgaaatctttgggttc |
486983 |
T |
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| Q |
119 |
atgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaagaattccccttgctattccat |
218 |
Q |
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| T |
486984 |
atgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaagaattccccttgctattccat |
487083 |
T |
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| Q |
219 |
ttattatatcaagccgcttcgt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
487084 |
ttattatatcaagccgcttcgt |
487105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 22689341 - 22689458
Alignment:
| Q |
83 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
182 |
Q |
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| T |
22689341 |
attctagccatgccaaaatctgaaatctttggattcatatcattgtctactaaaatattgcttgcctttagatccctatgtatgattcttaatatagaat |
22689440 |
T |
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| Q |
183 |
cttcatgaagataaagaa |
200 |
Q |
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| T |
22689441 |
cttgatgaagataaagaa |
22689458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 40126025 - 40126087
Alignment:
| Q |
134 |
aacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataa |
196 |
Q |
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| T |
40126025 |
aacacattacttgcctttatatccctatgtatgattttaattcttgactcttcatgaagataa |
40126087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 28433242 - 28433121
Alignment:
| Q |
83 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
182 |
Q |
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| T |
28433242 |
attctagccatgccaaaatctgaaattttaggatccatttcattgtctagtaaaatattacttgcctttagatctctgtgtatgatccttaatctagaat |
28433143 |
T |
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| Q |
183 |
cttcatgaagataaagaattcc |
204 |
Q |
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||| ||||||||| ||||||| |
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| T |
28433142 |
cttgatgaagatattgaattcc |
28433121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 8284 - 8401
Alignment:
| Q |
83 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
182 |
Q |
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||||| ||||| ||||| |||||||| || || ||||| |||| ||||||||| | |||||| |||| |||||||| ||||| ||| | | ||| |||| |
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| T |
8284 |
attctagccatgccaaaatctgaaattttgggattcatatcatcgtccaataaaatattactcactttcagatctctgtgtatgattcgtaatcttgaat |
8383 |
T |
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| Q |
183 |
cttcatgaagataaagaa |
200 |
Q |
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| T |
8384 |
cttgatgaagataaagaa |
8401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 1077416 - 1077314
Alignment:
| Q |
95 |
ccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagat |
194 |
Q |
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| T |
1077416 |
ccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagat |
1077317 |
T |
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| Q |
195 |
aaa |
197 |
Q |
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||| |
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| T |
1077316 |
aaa |
1077314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 4548064 - 4548122
Alignment:
| Q |
137 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata |
195 |
Q |
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| T |
4548064 |
acattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaagata |
4548122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 3080467 - 3080412
Alignment:
| Q |
137 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaag |
192 |
Q |
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||||||||||||||||| |||||||| |||| | ||||||||| ||||||||||| |
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| T |
3080467 |
acattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaag |
3080412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 3094904 - 3094846
Alignment:
| Q |
137 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata |
195 |
Q |
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||||||||||||||||| |||||||| |||| | |||||||| |||||||||||||| |
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| T |
3094904 |
acattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagata |
3094846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 1050492 - 1050411
Alignment:
| Q |
116 |
ttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaa |
197 |
Q |
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| T |
1050492 |
ttcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatccttaatctagaatcttgatgaagataaa |
1050411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 1091235 - 1091154
Alignment:
| Q |
116 |
ttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaa |
197 |
Q |
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||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| ||||||||||| |
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| T |
1091235 |
ttcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagataaa |
1091154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 47584404 - 47584283
Alignment:
| Q |
83 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
182 |
Q |
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||||| ||||| ||||| ||||| || ||||| ||||||| | | || ||||| ||||| || | ||| ||||| | ||||||||||| || | ||||| |
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| T |
47584404 |
attctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaat |
47584305 |
T |
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| Q |
183 |
cttcatgaagataaagaattcc |
204 |
Q |
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||||||| || ||||||||||| |
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| T |
47584304 |
cttcatggaggtaaagaattcc |
47584283 |
T |
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