View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_25 (Length: 237)
Name: NF20611_low_25
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2590592 - 2590816
Alignment:
| Q |
1 |
ccattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgc |
100 |
Q |
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| T |
2590592 |
ccattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgc |
2590691 |
T |
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| Q |
101 |
tggagtgaagttcctgagaaagctggtctgccc---ttannnnnnnnctttctatttttagaatgaaaaaacaaatttattcatcttcatcttttctaat |
197 |
Q |
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| T |
2590692 |
tggagtgaagttcctgagaaagctggtctgcccttttttttttttttctttctatttttagaatgaaaaaacaaatttattcatcttcatcttttctaat |
2590791 |
T |
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| Q |
198 |
tatgatgaaaaaacaaattaattat |
222 |
Q |
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| T |
2590792 |
tatgatgaaaaaacaaattaattat |
2590816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 41351645 - 41351519
Alignment:
| Q |
2 |
cattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgct |
101 |
Q |
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| T |
41351645 |
cattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatcacttacattaccactcatggctatggctgtt |
41351546 |
T |
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| Q |
102 |
ggagtgaagttcctgagaaagctggtc |
128 |
Q |
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| T |
41351545 |
ggagtgaagttcctgacaaagctggtc |
41351519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 5921496 - 5921408
Alignment:
| Q |
18 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgctggagt |
106 |
Q |
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| T |
5921496 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggacatggttgttggagt |
5921408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 5960654 - 5960566
Alignment:
| Q |
18 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgctggagt |
106 |
Q |
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| T |
5960654 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggacatggttgttggagt |
5960566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 5984916 - 5984828
Alignment:
| Q |
18 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgctggagt |
106 |
Q |
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| T |
5984916 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggacatggttgttggagt |
5984828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 5949388 - 5949337
Alignment:
| Q |
18 |
aacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcat |
69 |
Q |
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| T |
5949388 |
aacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcat |
5949337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5843420 - 5843363
Alignment:
| Q |
21 |
agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat |
78 |
Q |
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||||||| || ||||| || |||||||||||||||||||| |||||||| | |||||| |
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| T |
5843420 |
agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat |
5843363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5850162 - 5850105
Alignment:
| Q |
21 |
agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat |
78 |
Q |
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||||||| || ||||| || |||||||||||||||||||| |||||||| | |||||| |
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| T |
5850162 |
agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat |
5850105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 42789183 - 42789085
Alignment:
| Q |
8 |
tgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgctggagt |
106 |
Q |
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||||| ||| |||||||||| || ||||| || |||||||| ||||||||||| |||||||| | ||||| |||| | |||| ||||||| |||||| |
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| T |
42789183 |
tgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggacatggttgttggagt |
42789085 |
T |
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