View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_5 (Length: 425)
Name: NF20611_low_5
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 32534281 - 32534682
Alignment:
| Q |
19 |
agtaaccctcgcaaataagggcatgactaacagcctagacactccaaaatagctagcaaatattatattggatccttctaacctacacaattcaatcatg |
118 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32534281 |
agtaaccctcacaaataagggcatgactaacagcctagacactccaaaacagctagcaaatattatattggatccttctaacctacacaattcaatcatg |
32534380 |
T |
|
| Q |
119 |
cttgaatttcagtatcaatagtactgggatagcacaattgtttgataaaaatactgtagtattttataatgactaatgctgacttgagaaacaatgatgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
32534381 |
cttgaatttcagtatcaatagtactgggatagcacaattgtttgataaaaatactgtagtattatataatgactaatgctgacttaagaaacaatgatgt |
32534480 |
T |
|
| Q |
219 |
ctttagtagtataatttagaatttgtatttttattttagcattatattaagtttgcacgttgtatcttagcccatcatgtcttgtagaatctacaattgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32534481 |
ctttagtagtataatttagaatttgtatttttatgttagcattatattaagtttgcacgttgtatcttagcccatcatgtcttgtagaatctacaattgg |
32534580 |
T |
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| Q |
319 |
tcatcacatgtcaatgagctcttgttattctagacatgtcctgcacatgcttcctagcttgatacaatttgtcaccaaaactcagttcgcattcatctca |
418 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32534581 |
tcatcacatgtcaatgacctcttgttattctatacatgtcctacacatgcttcctagcttgatacaatttgtcaccaaaactcagttcgcattcatatca |
32534680 |
T |
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| Q |
419 |
ct |
420 |
Q |
| |
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|| |
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| T |
32534681 |
ct |
32534682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 32549959 - 32549995
Alignment:
| Q |
369 |
ttcctagcttgatacaatttgtcaccaaaactcagtt |
405 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
32549959 |
ttcctagcttgatacaatttgtctccaaaactcagtt |
32549995 |
T |
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