View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20611_low_6 (Length: 398)

Name: NF20611_low_6
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20611_low_6
NF20611_low_6
[»] chr3 (4 HSPs)
chr3 (3-232)||(37413933-37414162)
chr3 (237-376)||(37415917-37416056)
chr3 (250-359)||(55424466-55424575)
chr3 (250-324)||(31282143-31282217)
[»] chr7 (1 HSPs)
chr7 (3-229)||(16806641-16806863)
[»] chr4 (2 HSPs)
chr4 (3-228)||(23005368-23005592)
chr4 (250-359)||(28656723-28656832)
[»] chr1 (2 HSPs)
chr1 (237-376)||(7305312-7305451)
chr1 (244-375)||(22590030-22590161)
[»] chr2 (3 HSPs)
chr2 (237-376)||(1310143-1310282)
chr2 (244-375)||(30934912-30935043)
chr2 (307-340)||(23233322-23233355)
[»] chr5 (2 HSPs)
chr5 (237-376)||(11796849-11796990)
chr5 (282-347)||(11236004-11236069)
[»] chr8 (3 HSPs)
chr8 (282-347)||(23482847-23482912)
chr8 (307-340)||(32553541-32553574)
chr8 (307-340)||(39174363-39174396)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 37413933 - 37414162
Alignment:
Q  3 gtcaatatttcatctgtccattagacttcaccttacaagttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37413933 gtcaatatttcatctgtccattagacttcaccttacaagttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactc 37414032  T
Q  103 acatcttacttaaccctcttccacaagctatcttttactgtgccacattcaggtctgctcaatttattttatttaccctctcagtctacttactagatac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37414033 acatcttacttaaccctcttccacaagctatcttttactgtgccacattcaggtctgctcaatttattttatttaccctctcagtctacttactagatac 37414132  T
Q  203 tttttacaccaattgaaccaatcaatataa 232  Q
    ||||||||||||||||||||||||||||||    
T  37414133 tttttacaccaattgaaccaatcaatataa 37414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 37415917 - 37416056
Alignment:
Q  237 gaaatttagagacaaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatgg 336  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37415917 gaaatttagagagaaagtggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatgg 37416016  T
Q  337 tggtggtggggttgccaaaggagttcggacggagaagtaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37416017 tggtggtggggttgccaaaggagttcggacggagaagtaa 37416056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 55424575 - 55424466
Alignment:
Q  250 aaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggtggggtt 349  Q
    |||||||||||||  || ||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||  |||||  ||||||| ||||||||    
T  55424575 aaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagggagaagagatgaatttgttggtggttgtggggtt 55424476  T
Q  350 gccaaaggag 359  Q
      ||||||||    
T  55424475 ttcaaaggag 55424466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 31282143 - 31282217
Alignment:
Q  250 aaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagaga 324  Q
    |||||||||||||  || ||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  31282143 aaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagggagaagaga 31282217  T

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Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 16806863 - 16806641
Alignment:
Q  3 gtcaatatttcatctgtccattagacttcaccttacaagttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactc 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||   |||    
T  16806863 gtcaatatttcatctatccattagacttcaccttacaagttatgcataattacatgcactgatatgcactaaacgtgtcta-gcctttaaagta---ctc 16806768  T
Q  103 acatcttacttaaccctcttccacaagctatcttttactgtgccacattcaggtctgctcaatttattttatttaccctctcagtctacttactagatac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16806767 acatcttacttaaccctcttccacaagctatcttttactgtgccacattcaggtctgctcaatttattttatttaccctctcagtctacttactagatac 16806668  T
Q  203 tttttacaccaattgaaccaatcaata 229  Q
    |||||||||||||||||||||||||||    
T  16806667 tttttacaccaattgaaccaatcaata 16806641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 23005592 - 23005368
Alignment:
Q  3 gtcaatatttcatctgtccattagacttcaccttacaagttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactc 102  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  23005592 gtcaatatttcatctgtccattaaatttcaccttacaagttatgcataattacatgcactgatatacattaaacgtgtcta-gcctttaaagtataactc 23005494  T
Q  103 acatcttacttaaccctcttccacaagctatcttttactgtgccacattcaggtctgctcaatttattttatttaccctctcagtctacttactagatac 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| | |||    
T  23005493 acatcttacttaacccttttccacaagctatcttttactgtgccacattcaggcctgctcattttattttatttaccctctcaatctacttactggttac 23005394  T
Q  203 tttttacaccaattgaaccaatcaat 228  Q
    ||||||||||||||||||||||||||    
T  23005393 tttttacaccaattgaaccaatcaat 23005368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 359
Target Start/End: Original strand, 28656723 - 28656832
Alignment:
Q  250 aaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggtggggtt 349  Q
    |||||||||||||  || ||||||| |||||||||||||||||||| ||| ||||||||||||||  ||||||||  |||| | ||||||| ||||||||    
T  28656723 aaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagagagaagagatgaattcattggtggttgtggggtt 28656822  T
Q  350 gccaaaggag 359  Q
      ||||||||    
T  28656823 ttcaaaggag 28656832  T

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Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 237 - 376
Target Start/End: Complemental strand, 7305451 - 7305312
Alignment:
Q  237 gaaatttagagacaaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatgg 336  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  7305451 gaaatttagagacaaagtggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttattgaataggaagaagagagaaatttaatga 7305352  T
Q  337 tggtggtggggttgccaaaggagttcggacggagaagtaa 376  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7305351 tggtggtggggttgccaaaggagtccggacggagaagtaa 7305312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 244 - 375
Target Start/End: Original strand, 22590030 - 22590161
Alignment:
Q  244 agagacaaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggt 343  Q
    ||||| || |||||||||  ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| |||||    
T  22590030 agagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggt 22590129  T
Q  344 ggggttgccaaaggagttcggacggagaagta 375  Q
    ||||||| |||||||| |||||||||||||||    
T  22590130 ggggttgtcaaaggaggtcggacggagaagta 22590161  T

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Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 1310143 - 1310282
Alignment:
Q  237 gaaatttagagacaaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatgg 336  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||     
T  1310143 gaaatttagagacaaagtggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttatttaataggaagaagagagaaatttaatga 1310242  T
Q  337 tggtggtggggttgccaaaggagttcggacggagaagtaa 376  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1310243 tggtggtggggttgccaaaggagtccggacggagaagtaa 1310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 30935043 - 30934912
Alignment:
Q  244 agagacaaagtggtgattgaggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggt 343  Q
    ||||| || |||||||||  ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| |||||    
T  30935043 agagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggt 30934944  T
Q  344 ggggttgccaaaggagttcggacggagaagta 375  Q
    ||||||| |||||||| |||||||||||||||    
T  30934943 ggggttgtcaaaggaggtcggacggagaagta 30934912  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 23233322 - 23233355
Alignment:
Q  307 ttgaagaggaagaagagagaaatttaatggtggt 340  Q
    ||||||||||||||||||| ||||||||||||||    
T  23233322 ttgaagaggaagaagagaggaatttaatggtggt 23233355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 11796849 - 11796990
Alignment:
Q  237 gaaatttagagacaaagtggtgattgagg-tatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatg 335  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||||||    
T  11796849 gaaatttagagacaaagtggtgattgggggtatttcaaattctcaccaatttaaaaataagttaatggttattaaaaaggaagaagagataaatttaatg 11796948  T
Q  336 gtggt-ggtggggttgccaaaggagttcggacggagaagtaa 376  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  11796949 gtggtgggtggggttgccaaaggagtccggacggagaagtaa 11796990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 11236069 - 11236004
Alignment:
Q  282 caatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggtgggg 347  Q
    |||||||||||||| || | || | ||| |||| |||||||||| |||| ||||||||||||||||    
T  11236069 caatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtgggg 11236004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 23482847 - 23482912
Alignment:
Q  282 caatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggtgggg 347  Q
    |||||||||||||| || | || | ||| |||| |||||||||| |||| ||||||||||||||||    
T  23482847 caatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtgggg 23482912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 32553541 - 32553574
Alignment:
Q  307 ttgaagaggaagaagagagaaatttaatggtggt 340  Q
    ||||||||||||||||||| ||||||||||||||    
T  32553541 ttgaagaggaagaagagaggaatttaatggtggt 32553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 39174363 - 39174396
Alignment:
Q  307 ttgaagaggaagaagagagaaatttaatggtggt 340  Q
    ||||||||||||||||||| ||||||||||||||    
T  39174363 ttgaagaggaagaagagaggaatttaatggtggt 39174396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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