View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20611_low_7 (Length: 390)

Name: NF20611_low_7
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20611_low_7
NF20611_low_7
[»] chr4 (16 HSPs)
chr4 (158-373)||(48524292-48524507)
chr4 (13-103)||(48524564-48524654)
chr4 (31-103)||(53142852-53142924)
chr4 (31-103)||(34236251-34236323)
chr4 (31-103)||(53145200-53145272)
chr4 (32-103)||(31089487-31089558)
chr4 (31-84)||(35808318-35808371)
chr4 (34-102)||(32543955-32544023)
chr4 (31-102)||(2908181-2908252)
chr4 (242-301)||(39279911-39279970)
chr4 (29-83)||(4482171-4482225)
chr4 (57-102)||(48400950-48400996)
chr4 (34-103)||(40298042-40298111)
chr4 (62-103)||(55090851-55090892)
chr4 (55-103)||(28299284-28299332)
chr4 (31-103)||(51099996-51100068)
[»] chr5 (6 HSPs)
chr5 (31-103)||(15139140-15139212)
chr5 (31-103)||(34346953-34347025)
chr5 (35-102)||(16802099-16802166)
chr5 (44-103)||(41645103-41645162)
chr5 (30-103)||(6830339-6830412)
chr5 (31-103)||(35626659-35626731)
[»] chr2 (4 HSPs)
chr2 (31-103)||(1870464-1870536)
chr2 (26-102)||(34501559-34501635)
chr2 (56-103)||(5444487-5444534)
chr2 (34-89)||(18857519-18857574)
[»] chr1 (4 HSPs)
chr1 (31-103)||(27569-27641)
chr1 (57-103)||(41936216-41936262)
chr1 (28-70)||(51046761-51046803)
chr1 (31-103)||(39993449-39993521)
[»] chr3 (4 HSPs)
chr3 (43-102)||(34228240-34228299)
chr3 (45-103)||(41287867-41287925)
chr3 (235-320)||(39358223-39358308)
chr3 (25-102)||(31472019-31472096)
[»] chr7 (5 HSPs)
chr7 (27-102)||(1112119-1112193)
chr7 (31-89)||(24937916-24937974)
chr7 (31-89)||(8656380-8656439)
chr7 (56-101)||(28664542-28664587)
chr7 (63-103)||(47537496-47537536)
[»] chr8 (3 HSPs)
chr8 (31-103)||(18131262-18131334)
chr8 (56-103)||(4989766-4989813)
chr8 (62-103)||(10451970-10452011)
[»] chr6 (3 HSPs)
chr6 (27-103)||(2398079-2398154)
chr6 (31-103)||(32800276-32800348)
chr6 (31-103)||(227406-227478)
[»] scaffold0017 (1 HSPs)
scaffold0017 (38-82)||(31560-31604)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 158 - 373
Target Start/End: Complemental strand, 48524507 - 48524292
Alignment:
Q  158 ggttgcttaaccaatatcctcatagcaatgtttaacattctccataaataaatgttgctatgttgtacctccctttgaacagagatattatcaacctcct 257  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48524507 ggttgcttaatcaatatcctgagagcaatgtttaacattctccataaataaatgttgctatgttgtacctcccttggaacagagatattatcaacctcct 48524408  T
Q  258 cctcattgtttaatacatttcccacaaactcataaattgtaactcttttagaccttagtatattctaatatagagaaaatttccaacaaaagtattattg 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  48524407 cctcattgtttaatacatttcccacaaactcataaattttaactcttttagaccttagtatattctaatatagagaaaatttcccacaaaagttttattg 48524308  T
Q  358 taacctgcaacattgt 373  Q
    ||||||||||||||||    
T  48524307 taacctgcaacattgt 48524292  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 48524654 - 48524564
Alignment:
Q  13 aatatgcatattagaagagtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48524654 aatatgcatattagaagagtcttactaaccagtgccctcagaacaatgattaagcaaactataaataaaaaatttgtatagaaaatataag 48524564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 53142924 - 53142852
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||   |||||||||||    
T  53142924 gtcttgctaaccagtgtcctcggaacaatggttaaggaagctataaataaaaaatttgtcatgaaaatataag 53142852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 34236323 - 34236251
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| |||| ||||| ||||||| |||| |||||||||||||||||||||||   |||||||||||    
T  34236323 gtcttgctaaccagtgccctcataacaatggttaaagaaactataaataaaaaatttgtcctgaaaatataag 34236251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 53145272 - 53145200
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||||||||| |||||  |||||| |||||||||||||||||||||||||| |   |||||||||||    
T  53145272 gtcttgctaactagtgccctcaagacaatggttaaggaaactataaataaaaaatttatcatgaaaatataag 53145200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 31089487 - 31089558
Alignment:
Q  32 tcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||  |||||||||||  |||||||||||||| ||||||||||||| ||||| || ||||||||||    
T  31089487 tcttgctaatcagtgtcctcagggcaatgattaaggaatctataaataaaaattttgtctaaaaaatataag 31089558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 35808318 - 35808371
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaa 84  Q
    ||||||||||| |||| ||||| | ||||| |||||||||||||||||||||||    
T  35808318 gtcttgctaaccagtgccctcacatcaatggttaaggaaactataaataaaaaa 35808371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 32543955 - 32544023
Alignment:
Q  34 ttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    |||||||||| ||||  | ||||| || |||||||| |||||||||||||||||||  |||||||||||    
T  32543955 ttgctaactaatgtctccggaacattggttaaggaatctataaataaaaaatttgtcgagaaaatataa 32544023  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 2908181 - 2908252
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    ||||| |||||  |||||||||   ||||| |||||||||||||||||| ||||||||| | ||||||||||    
T  2908181 gtcttactaaccggtgtcctcacggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataa 2908252  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 39279911 - 39279970
Alignment:
Q  242 atattatcaacctcctcctcattgtttaatacatttcccacaaactcataaattgtaact 301  Q
    ||||||| |||||| ||||||| |||||| |||| ||||||||||||| || ||||||||    
T  39279911 atattatgaacctcttcctcatggtttaaaacatatcccacaaactcacaagttgtaact 39279970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 4482225 - 4482171
Alignment:
Q  29 gagtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaa 83  Q
    ||||||||||||| |||| ||||||| || ||||||||||  |||||||||||||    
T  4482225 gagtcttgctaacgagtgccctcagaccattgattaaggattctataaataaaaa 4482171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 48400996 - 48400950
Alignment:
Q  57 aatgattaaggaaa-ctataaataaaaaatttgtatagaaaatataa 102  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||||    
T  48400996 aatgattaaggaaaactataaataaaaaatttgttttgaaaatataa 48400950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 40298111 - 40298042
Alignment:
Q  34 ttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||| ||||||||| ||||  ||||| |||| ||||||||||||| ||||||| | | |||||||||||    
T  40298111 ttgcttactagtgtcttcagggcaatggttaatgaaactataaatagaaaatttattttgaaaatataag 40298042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 55090892 - 55090851
Alignment:
Q  62 ttaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||||||||| |||||||||| | |||||||||||    
T  55090892 ttaaggaaactataaatgaaaaatttgtcttgaaaatataag 55090851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 28299284 - 28299332
Alignment:
Q  55 acaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||| ||||||||| |||||||| ||||||| ||| |||||||||||    
T  28299284 acaatggttaaggaaattataaatagaaaatttatattgaaaatataag 28299332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 51099996 - 51100068
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||| |||||||||| |||||   ||||| |||||||| ||||||||| ||||||| | | |||||||||||    
T  51099996 gtctttctaactagtgccctcaaggcaatggttaaggaatctataaatagaaaatttattttgaaaatataag 51100068  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 15139140 - 15139212
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||| | |||||||||||    
T  15139140 gtcttgctaataagtgccctcagaataatggttaaggaaactataaataaaaaatttgtcttgaaaatataag 15139212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 34347025 - 34346953
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||| ||||| |||||||||| | ||||| |||||||| ||| ||||||||||||||| | |||||||||||    
T  34347025 gtcttactaaccagtgtcctcatagcaatggttaaggaatctacaaataaaaaatttgtcttgaaaatataag 34346953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 16802166 - 16802099
Alignment:
Q  35 tgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    |||||||||||| ||||| ||||||| || | ||||||||||||| ||||||||| | ||||||||||    
T  16802166 tgctaactagtgccctcaaaacaatggttcatgaaactataaatagaaaatttgtcttgaaaatataa 16802099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 41645162 - 41645103
Alignment:
Q  44 gtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| || || |||| ||| ||||||||||||| ||||| |||||||||||||    
T  41645162 gtgtcctcagagcattggttaaagaatctataaataaaaattttgtctagaaaatataag 41645103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 6830412 - 6830339
Alignment:
Q  30 agtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| ||||| |||||| | |||| ||||||||  |||||||| ||||| ||| | |||||||||||    
T  6830412 agtcttgctaattagtgccctcagcaaaatggttaaggaatttataaatagaaaatgtgtcttgaaaatataag 6830339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 35626731 - 35626659
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||||||||| ||| || |||||| |||||||| | || |||| ||| ||||| | |||||||||||    
T  35626731 gtcttgctaactagtgccctaaggacaatggttaaggaatccattaatagaaattttgttttgaaaatataag 35626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 1870464 - 1870536
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| |||| ||||||  ||||| |||||||||||||||||| ||||||||| | |||||||||||    
T  1870464 gtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataag 1870536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 34501559 - 34501635
Alignment:
Q  26 gaagagtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    |||| ||||||||||  |||||| || || |||||||||||||| |||||||||||||| |||| |  |||||||||    
T  34501559 gaagtgtcttgctaataagtgtcttcggagcaatgattaaggaatctataaataaaaaagttgtcttaaaaatataa 34501635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 5444487 - 5444534
Alignment:
Q  56 caatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||| ||||||||||||||||| ||||| | |||||||||||    
T  5444487 caatgattaaagaaactataaataaaaattttgtcttgaaaatataag 5444534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 18857574 - 18857519
Alignment:
Q  34 ttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgt 89  Q
    |||||||| ||||| ||||  |||||||||||| |||||||||||||||| |||||    
T  18857574 ttgctaacgagtgtactcatgacaatgattaagaaaactataaataaaaagtttgt 18857519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 27641 - 27569
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| |||| |||||  ||||||||||||| ||||||||||||||||||||| |  ||||||||||    
T  27641 gtcttgctaaccagtgccctcacgacaatgattaagggaactataaataaaaaatttgtctttaaaatataag 27569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 41936262 - 41936216
Alignment:
Q  57 aatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||    
T  41936262 aatgattgaggaaactataaataaaaaatttgtcttgaaaatataag 41936216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 51046803 - 51046761
Alignment:
Q  28 agagtcttgctaactagtgtcctcagaacaatgattaaggaaa 70  Q
    |||||||||||||  |||||||||||| |||||||||||||||    
T  51046803 agagtcttgctaatcagtgtcctcagagcaatgattaaggaaa 51046761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 39993521 - 39993449
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||| | |||  |||||||||||| ||||| || ||| ||||||||| ||||| | |||||||||||    
T  39993521 gtcttgctaattggtgctctcagaacaatggttaagaaatctacaaataaaaattttgtcttgaaaatataag 39993449  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 34228240 - 34228299
Alignment:
Q  43 agtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| |  |||||||||    
T  34228240 agtgtcctcaggacaatggttaaggaaactataaataaaaaatttgtcttaaaaatataa 34228299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 41287867 - 41287925
Alignment:
Q  45 tgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| |  ||||||||||    
T  41287867 tgtcctcaggacaatgattaaggaaactataaatagaaaatttgttttaaaaatataag 41287925  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 39358308 - 39358223
Alignment:
Q  235 aacagagatattatcaacctcctcctcattgtttaatacatttcccacaaactcataaattgtaactcttttagaccttagtatat 320  Q
    |||||||| ||||  ||| || ||||||| |||||| |||||||||||||||||| || ||||||||  ||||||||||| |||||    
T  39358308 aacagagacattagaaacttcttcctcatggtttaaaacatttcccacaaactcacaatttgtaactgctttagaccttattatat 39358223  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 31472019 - 31472096
Alignment:
Q  25 agaagagtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    |||||||||||||||||   |  ||| | ||||||||| ||| |||||||||||||||||||| | | ||||||||||    
T  31472019 agaagagtcttgctaaccgataccctaataacaatgatgaagaaaactataaataaaaaatttattttgaaaatataa 31472096  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 1112119 - 1112193
Alignment:
Q  27 aagagtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataa 102  Q
    |||||||| | ||||||||||| ||||| |||||||| ||||||||||||||| ||||||||| | |||| |||||    
T  1112119 aagagtctcgttaactagtgtc-tcagagcaatgattgaggaaactataaatagaaaatttgttttgaaattataa 1112193  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 24937974 - 24937916
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgt 89  Q
    ||||||||||| |||| ||||||  ||||| |||||||||||||||||| |||||||||    
T  24937974 gtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgt 24937916  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 8656439 - 8656380
Alignment:
Q  31 gtcttgctaactagtgtcctcaga-acaatgattaaggaaactataaataaaaaatttgt 89  Q
    ||||||||||| ||||| |||| | |||||| |||||||||||||||||| |||||||||    
T  8656439 gtcttgctaaccagtgttctcaaagacaatggttaaggaaactataaatagaaaatttgt 8656380  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 28664542 - 28664587
Alignment:
Q  56 caatgattaaggaaactataaataaaaaatttgtatagaaaatata 101  Q
    ||||| |||||||| ||||||||| ||||||||||| |||||||||    
T  28664542 caatggttaaggaatctataaatagaaaatttgtattgaaaatata 28664587  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 47537536 - 47537496
Alignment:
Q  63 taaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||||||||| |||||||||| | |||||||||||    
T  47537536 taaggaaactataaatgaaaaatttgtcttgaaaatataag 47537496  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 18131334 - 18131262
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||||| || ||||||  ||||||||||| || | ||||||| ||||||||| | |||||||||||    
T  18131334 gtcttgctaactaatgccctcagggcaatgattaagaaatccataaatagaaaatttgtcttgaaaatataag 18131262  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 4989813 - 4989766
Alignment:
Q  56 caatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||| ||||| |||||||||||||||||||||| | |||||||||||    
T  4989813 caatggttaagaaaactataaataaaaaatttgtcttgaaaatataag 4989766  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 10452011 - 10451970
Alignment:
Q  62 ttaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  10452011 ttaaggaaactataaataaaaattttgtattaaaaatataag 10451970  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 2398154 - 2398079
Alignment:
Q  27 aagagtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||||||||||||  |||| ||||| | ||||||||||||| ||||||||| ||||||| | | |||||||||||    
T  2398154 aagagtcttgctaaccggtgttctcagga-aatgattaaggaatctataaatagaaaatttatcttgaaaatataag 2398079  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 32800348 - 32800276
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    |||||| |||| |||| |||||  |||||| |||||||||||||||||| ||||||||| |  ||||||||||    
T  32800348 gtcttgttaacaagtgccctcatgacaatggttaaggaaactataaatagaaaatttgtcttaaaaatataag 32800276  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 227478 - 227406
Alignment:
Q  31 gtcttgctaactagtgtcctcagaacaatgattaaggaaactataaataaaaaatttgtatagaaaatataag 103  Q
    ||||||||||| |||||||| ||  ||||| |||||||| ||||||||| ||| ||| | | |||||||||||    
T  227478 gtcttgctaaccagtgtccttagggcaatggttaaggaatctataaatagaaatttttttttgaaaatataag 227406  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 31604 - 31560
Alignment:
Q  38 taactagtgtcctcagaacaatgattaaggaaactataaataaaa 82  Q
    |||||||||||  |||| ||||| |||||||||||||||||||||    
T  31604 taactagtgtcaacagatcaatggttaaggaaactataaataaaa 31560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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