View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20611_low_9 (Length: 377)
Name: NF20611_low_9
Description: NF20611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20611_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 11656125 - 11655831
Alignment:
| Q |
72 |
atgcgtgataaacttgagacctctgatagagaacaaaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagac |
171 |
Q |
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| T |
11656125 |
atgcgtgataaacttgagacctctgatagagaacaaaattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagac |
11656026 |
T |
|
| Q |
172 |
tcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactc |
271 |
Q |
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| T |
11656025 |
tcaaattctccaccatcgcaatatcattgttgaatccgtcattaccaacaaaacgagctaccgaacaatctggggagaacaagcttgttgtttcatactc |
11655926 |
T |
|
| Q |
272 |
ttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcat |
366 |
Q |
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||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11655925 |
ttttccacctcccattattggcatttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccacttacttcat |
11655831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 107 - 366
Target Start/End: Complemental strand, 11669858 - 11669599
Alignment:
| Q |
107 |
aaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaat |
206 |
Q |
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||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||| | | || ||||||||||||||||| ||||||||| |
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| T |
11669858 |
aaattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaat |
11669759 |
T |
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| Q |
207 |
ccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaa |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| |
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| T |
11669758 |
ccgtcattaccaacaaaacgagctacggaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaa |
11669659 |
T |
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| Q |
307 |
tgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcat |
366 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
11669658 |
tgttcacacgactcacatagttagatttatatgtttggcccaacacaccacttacttcat |
11669599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 106 - 366
Target Start/End: Complemental strand, 11664548 - 11664288
Alignment:
| Q |
106 |
aaaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaa |
205 |
Q |
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| T |
11664548 |
aaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctccacaattccaatatttttgtttaa |
11664449 |
T |
|
| Q |
206 |
tccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcacca |
305 |
Q |
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||| || || |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11664448 |
tccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcacca |
11664349 |
T |
|
| Q |
306 |
atgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcat |
366 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
11664348 |
atgttcacacgactcacatagttaggtttatatgtttggcccaacacaccatttacttcat |
11664288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 107 - 366
Target Start/End: Original strand, 7343949 - 7344208
Alignment:
| Q |
107 |
aaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaat |
206 |
Q |
| |
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||||||||| |||| |||||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||||| | ||||||| ||||| ||| |
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| T |
7343949 |
aaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaat |
7344048 |
T |
|
| Q |
207 |
ccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaa |
306 |
Q |
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|| | || |||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||| ||||||||| |||| |||| |
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| T |
7344049 |
ccagtgtttccaatgaaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattattggcattcttgctccaa |
7344148 |
T |
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| Q |
307 |
tgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcat |
366 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7344149 |
tgttcacacgactcacatagttaggtttatatgtttggcccaacacgccactcacttcat |
7344208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 11656209 - 11656169
Alignment:
| Q |
18 |
agttatttgatgatttgatacattattgtatttaaacaaat |
58 |
Q |
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| T |
11656209 |
agttatttgatgatttgatacattattgtatttaaacaaat |
11656169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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