View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20612_high_1 (Length: 824)

Name: NF20612_high_1
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20612_high_1
NF20612_high_1
[»] chr7 (4 HSPs)
chr7 (232-479)||(12830686-12830939)
chr7 (659-824)||(12830398-12830563)
chr7 (475-595)||(12830214-12830334)
chr7 (7-89)||(12829712-12829794)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 232 - 479
Target Start/End: Complemental strand, 12830939 - 12830686
Alignment:
Q  232 caccgtaatttattcaatgagattctatatagttagttaagatgtgcgtgtctctaaatttaggttatgttcatagtttgttttctttctacttttaacg 331  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |    
T  12830939 caccgtaatttattcaataagattctatatagttagttaagatgtgcgtgtctctaaatttaggttatgttcatagtttattttctttctactttaaatg 12830840  T
Q  332 tggttgatgcattagccaacaatggtcaaagtcttgcccctcattcttctcagtggtgggcgacgccacctgcttttactttacgtttactgg------a 425  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||      |    
T  12830839 tggctgatgcattagccaagaatggtcaaagtcttgcccctcattcttctcagtggtgggcgacgccaccggcttttactttacatttactggatatata 12830740  T
Q  426 tagggatgctttaggattaccaaaccctagggtcactatgacctaaatttttgt 479  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  12830739 tagggatgctttaagattaccaaactctagggtcactatgacctaaatttttgt 12830686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 659 - 824
Target Start/End: Original strand, 12830398 - 12830563
Alignment:
Q  659 tggatgaatgtttctctatttctttctcagctctctctcctgcttttgtcacatgtaggtccatttgtgcttctgcctcttttgccaacctaacttcatg 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12830398 tggatgaatgtttctctatttctttctcagctctctctcctgcttttgtcacatgtaggtccatttgtgcttctgcctcttttgccaacctaacttcatg 12830497  T
Q  759 agctatgtccactcttgcttgtgcaatttccttctcagcctggataaacatttcaagttcaacatt 824  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12830498 agctatgtccactcttgcttgtgcaatttccttctcagcctggataaacatttcaagttcaacatt 12830563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 475 - 595
Target Start/End: Original strand, 12830214 - 12830334
Alignment:
Q  475 tttgtcctttaacacttcatgatatctattttctttattgcaaaaaatatatgccaatggttcactccatgtttgaggcatgtgattattcacatagcag 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12830214 tttgtcctttaacacttcatgatatctattttctttattgcaaaaactatatgccaatggttcactccatgtttgaggcatgtgattattcacatagcag 12830313  T
Q  575 tgtatgtggaatcctttgatg 595  Q
    |||||||||||||||||||||    
T  12830314 tgtatgtggaatcctttgatg 12830334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 12829712 - 12829794
Alignment:
Q  7 atgtctaccatcatgttctcagaaacctcaaaagttctatatatacaagagcttataaaaaggacagattaaactttagagaa 89  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12829712 atgtctaccatcatgttctcagaaacgtcaaaagttctatatatacaagagcttataaaaaggacagattaaactttagagaa 12829794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University