View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_high_10 (Length: 241)
Name: NF20612_high_10
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48125591 - 48125815
Alignment:
| Q |
1 |
ccaataatagtttcctaggcacttcaaacacggatgaagtctatagaattccaccgcgaaatgtaatttgaagttaaacaaagagaaacaaaaacataat |
100 |
Q |
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| T |
48125591 |
ccaataatagtttcctaggcacttcaaacacggatgtagtctatagaattccaccgcgaaatgtaatttgaagttaaacaaagagaaacaaaaacataat |
48125690 |
T |
|
| Q |
101 |
atgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataaatttttgacctttc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48125691 |
atgaactaaatgtggtaagggaacaaaagtttcgtactcatagaaccttgaaacttgttacaaaatacatagtttctagccaaagaatttttgacctttc |
48125790 |
T |
|
| Q |
199 |
taaattcagattgacgcctttcaac |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
48125791 |
taaattcagattgacgcctttcaac |
48125815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 48139194 - 48139062
Alignment:
| Q |
92 |
aaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataaatttt |
189 |
Q |
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|||||||| ||||||||||||||||||||| | |||| || | |||| | | |||| |||||| || | | || ||||||| ||| |||||||| || |
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| T |
48139194 |
aaacataacatgaactaaatgtggtaaggggataaaatttccatacttgaatagccttcaaacttattccgagatgaatagtttgtagtcaataaatctt |
48139095 |
T |
|
| Q |
190 |
tgacctttctaaattcagattgacgcctttcaa |
222 |
Q |
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| T |
48139094 |
tgacctttccaaattccgattgacgcctttcaa |
48139062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 32022433 - 32022309
Alignment:
| Q |
101 |
atgaactaaatgtggtaagggaacaaaagtttcgtactcagaa--ccttgaaacttgttacaaaatacatagtttctagccaataaatttttgacctttc |
198 |
Q |
| |
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||||||||||| || ||||||||||||||||| |||| || || | ||||||||| | |||||||||||||| |||||| | ||||||||||| |
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| T |
32022433 |
atgaactaaatatgaaaagggaacaaaagtttcatacttggacagccctcaaacttgttgtgagatacatagtttctactcaataattctttgacctttc |
32022334 |
T |
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| Q |
199 |
taaattcagattgacgcctttcaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
32022333 |
cgaattcagattgacgcctttcaac |
32022309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 25251791 - 25251736
Alignment:
| Q |
167 |
atagtttctagccaataaatttttgacctttctaaattcagattgacgcctttcaa |
222 |
Q |
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||||||| ||| |||||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
25251791 |
atagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaa |
25251736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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