View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20612_high_11 (Length: 239)
Name: NF20612_high_11
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4119780 - 4119639
Alignment:
| Q |
1 |
ctgaccaccgtatcggaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaacgccttttcctcgttcgcctgtgatgtttcatatatatctc |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4119780 |
ctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgccttttcctcgttcgcctgtgatgtttcat--atatctc |
4119683 |
T |
|
| Q |
101 |
ttgataagaattaattcaataaaaaa--tatatgaagttttatt |
142 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
4119682 |
ttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 4119408 - 4119327
Alignment:
| Q |
141 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaagttcatcactggagacttct |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcatcaccggagacttct |
4119327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University