View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_high_4 (Length: 402)
Name: NF20612_high_4
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 37361311 - 37361378
Alignment:
| Q |
75 |
taatgaaacttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaatca |
142 |
Q |
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| T |
37361311 |
taatgaaacttaaaatctaccattaaattttgtaaaactaatcacaacatttatcagtattttaatca |
37361378 |
T |
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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 24820333 - 24820289
Alignment:
| Q |
19 |
atgtataacttgaaatttgaaacctatagaaggagacacccacac |
63 |
Q |
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| T |
24820333 |
atgtataacttgaaatttgaaacctatagaaggagacacccacac |
24820289 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 35241154 - 35241216
Alignment:
| Q |
307 |
ttgtttattgatacacatagcaatctatacccagcttactataatagtatatgcaattagagg |
369 |
Q |
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| T |
35241154 |
ttgtttattgatatacatagcaatctatactcagcttacaataatagcatctgcaattagagg |
35241216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 14185602 - 14185525
Alignment:
| Q |
62 |
acaaagattaaagtaatgaaacttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaa |
139 |
Q |
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| T |
14185602 |
acaaagattaaactattataacttaatgtctactatatcattctttaaaactaatcacaacatgtataggtagtttaa |
14185525 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 38945328 - 38945386
Alignment:
| Q |
84 |
ttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaatca |
142 |
Q |
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| T |
38945328 |
ttaaaatctttcattacattttgtaaaactcatcacaacatttataggtagcttaatca |
38945386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 18331401 - 18331459
Alignment:
| Q |
84 |
ttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaatca |
142 |
Q |
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| T |
18331401 |
ttaaaatctttcattacattttgtaaaacttctcacaatatttataggtagcttaatca |
18331459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 32445348 - 32445304
Alignment:
| Q |
96 |
attacattttgtaaaactaatcacaacatttataggtagtttaat |
140 |
Q |
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| T |
32445348 |
attacattctttaaagctaatcacaacatgtataggtagtttaat |
32445304 |
T |
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