View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_high_5 (Length: 372)
Name: NF20612_high_5
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 146 - 354
Target Start/End: Complemental strand, 409833 - 409625
Alignment:
| Q |
146 |
aagataaatcatgaacatgtaccatacctgctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
245 |
Q |
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| T |
409833 |
aagataaatcatgtaaatgtaccataccagctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
409734 |
T |
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| Q |
246 |
agcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccagctctacca |
345 |
Q |
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| T |
409733 |
agcagcaatagtattagcagtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccagctctacca |
409634 |
T |
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| Q |
346 |
acaactttc |
354 |
Q |
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||||||||| |
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| T |
409633 |
acaactttc |
409625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 350
Target Start/End: Complemental strand, 48784796 - 48784678
Alignment:
| Q |
232 |
atcccatgttcagcagcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaa |
331 |
Q |
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||||| |||||||| || |||| ||| ||||| || |||||||| ||||| | |||||| ||||||||| || |||||||| |||||||| |||| |
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| T |
48784796 |
atcccgtgttcagcggcggcaacagtgttagcagtgggagcattaacaaccaagcaaccatgttcagtagcggcggccagatccacgttatcaataccaa |
48784697 |
T |
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| Q |
332 |
caccagctctaccaacaac |
350 |
Q |
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| T |
48784696 |
caccagctctaccaacaac |
48784678 |
T |
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