View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20612_low_15 (Length: 217)

Name: NF20612_low_15
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20612_low_15
NF20612_low_15
[»] chr8 (8 HSPs)
chr8 (16-213)||(1458912-1459112)
chr8 (16-213)||(2428619-2428819)
chr8 (16-179)||(2517331-2517494)
chr8 (17-173)||(2506359-2506515)
chr8 (16-156)||(2512971-2513111)
chr8 (20-168)||(2435034-2435182)
chr8 (20-168)||(2431644-2431792)
chr8 (38-156)||(2497653-2497771)
[»] chr7 (1 HSPs)
chr7 (16-86)||(946137-946207)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 1459112 - 1458912
Alignment:
Q  16 atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact 115  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||||||||||||||||||    
T  1459112 atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctact 1459013  T
Q  116 tcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacacaacatatgtct---gagtcacaacaaaatggcagaaaactacg 212  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | |   |||||||||  ||||||||||||||||||    
T  1459012 tcaaagaaaccagcataagcagtcattccaggcatacctgtagtcaaacaaaaacacaacatatatgtcacgagtcacaatgaaatggcagaaaactacg 1458913  T
Q  213 c 213  Q
    |    
T  1458912 c 1458912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 2428819 - 2428619
Alignment:
Q  16 atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact 115  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||||||||||||||||||    
T  2428819 atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctact 2428720  T
Q  116 tcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacacaacatatgtct---gagtcacaacaaaatggcagaaaactacg 212  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | |   |||||||||  ||||||||||||||||||    
T  2428719 tcaaagaaaccagcataagcagtcattccaggcatacctgtagtcaaacaaaaacacaacatatatgtcacgagtcacaatgaaatggcagaaaactacg 2428620  T
Q  213 c 213  Q
    |    
T  2428619 c 2428619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 2517331 - 2517494
Alignment:
Q  16 atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact 115  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||| |||||||||||   |||||||||| || ||||||||||||    
T  2517331 atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgaaacaaaaacattctctccttttttcggagagcctact 2517430  T
Q  116 tcaaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacacaacatat 179  Q
    ||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||    
T  2517431 tcaaagaaaccagcataagcggtcattcctggcatacctgtgctcaaacaaaaacacaaaatat 2517494  T

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Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 2506359 - 2506515
Alignment:
Q  17 tagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctactt 116  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||||| | || ||||||||    
T  2506359 tagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttggtagcgcctactt 2506458  T
Q  117 caaagaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaaacaca 173  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||    
T  2506459 caaagaaaccagcataagcagtcattcctggcatacctgcactcaaagaaaaacaca 2506515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 2512971 - 2513111
Alignment:
Q  16 atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctact 115  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||| ||||| |||| |||||||||||   ||||||||||||| ||||||||||||    
T  2512971 atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctact 2513070  T
Q  116 tcaaagaaaccagcatacgcagtcattcccggcatacctgt 156  Q
    ||||||||||||| ||| ||||||||||| |||||||||||    
T  2513071 tcaaagaaaccagaataagcagtcattcctggcatacctgt 2513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 2435182 - 2435034
Alignment:
Q  20 caaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctacttcaa 119  Q
    |||||||||| ||| |||||||| || ||||| |||||||| ||||| ||||||| ||||||| |||   |||||||||||||||||  ||||| |||||    
T  2435182 caaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacattctctcctttcttaggactgcctaattcaa 2435083  T
Q  120 agaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaa 168  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2435082 agaaaccagcatatgcagtcattcccggcatacctgtactcaaacaaaa 2435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 2431792 - 2431644
Alignment:
Q  20 caaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctacttcaa 119  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||  ||||| | ||||||| |||   | |||||||||||||||  ||||| |||||    
T  2431792 caaccatgcaattttgcaaattggccaacaagttgaccaacagcactggatgccgctgaaacataaacattttctcctttcttaggactgcctaattcaa 2431693  T
Q  120 agaaaccagcatacgcagtcattcccggcatacctgtactcaaacaaaa 168  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||    
T  2431692 agaaaccaacatatgcagtcaatcccagcatacctgtactcaaacaaaa 2431644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 2497653 - 2497771
Alignment:
Q  38 aattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaattgtctctcctttcttaggagagcctacttcaaagaaaccagcatacgcag 137  Q
    ||||| |||||||| ||||| ||||||||||| |||| |||||||||||  ||||||||||||||||||  ||||| |||||||||||||||||| ||||    
T  2497653 aattgaccaacaagttgaccgactgcaccagaggcagctgaaacaaaaacagtctctcctttcttaggactgcctagttcaaagaaaccagcataagcag 2497752  T
Q  138 tcattcccggcatacctgt 156  Q
    | ||||| |||||||||||    
T  2497753 ttattcctggcatacctgt 2497771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 946137 - 946207
Alignment:
Q  16 atagcaaccatgcaatttggcaaattggccaacaagctgaccaactgcaccagatgcagatgaaacaaaaa 86  Q
    |||||||||||||||||| |||| ||| |||||||| ||||| || ||||| ||||| | |||||||||||    
T  946137 atagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaa 946207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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