View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20612_low_2 (Length: 646)

Name: NF20612_low_2
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20612_low_2
NF20612_low_2
[»] chr4 (6 HSPs)
chr4 (34-218)||(38508070-38508255)
chr4 (330-501)||(38507769-38507933)
chr4 (424-501)||(30161971-30162048)
chr4 (430-501)||(55290067-55290138)
chr4 (535-639)||(38507626-38507728)
chr4 (278-310)||(38507950-38507982)
[»] chr5 (3 HSPs)
chr5 (420-501)||(40640268-40640349)
chr5 (429-501)||(32361829-32361901)
chr5 (429-501)||(32379060-32379132)
[»] chr8 (5 HSPs)
chr8 (424-501)||(31877212-31877289)
chr8 (429-501)||(31547809-31547881)
chr8 (430-501)||(31544656-31544727)
chr8 (430-501)||(31559518-31559589)
chr8 (430-501)||(31556512-31556583)
[»] chr7 (2 HSPs)
chr7 (429-501)||(30034438-30034510)
chr7 (430-501)||(45868103-45868174)
[»] chr2 (6 HSPs)
chr2 (429-501)||(18229431-18229503)
chr2 (430-501)||(6493518-6493589)
chr2 (430-501)||(8328455-8328526)
chr2 (430-501)||(9596926-9596997)
chr2 (430-501)||(33994624-33994695)
chr2 (430-501)||(21281553-21281623)
[»] chr1 (2 HSPs)
chr1 (429-501)||(38624995-38625067)
chr1 (429-501)||(46613935-46614007)
[»] chr3 (2 HSPs)
chr3 (430-501)||(32053544-32053615)
chr3 (424-501)||(50683113-50683190)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 38508255 - 38508070
Alignment:
Q  34 ataatttttggaaaaaataattaaatatgatttgatgatatatatttgcattgcaatacttcaaatggaaggttgtggtgttgttccttcacgagtaacc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38508255 ataatttttggaaaaaataattaaatatgatttgatgatatatatttgtattgcaatacttcaaatggaaggttgtggtgttgttccttcacgagtaacc 38508156  T
Q  134 aatcattaatactttgatctcaagcagtctattgccaaggatc-aaatttatgatggctcacacatacaagctatcattcttatgt 218  Q
    |||||| ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38508155 aatcatgaatactttgatctcaagcagtctattttcaaggatcaaaatttatgatggctcacacatacaagctatcattcttatgt 38508070  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 330 - 501
Target Start/End: Complemental strand, 38507933 - 38507769
Alignment:
Q  330 ctgttgaaaacaaaggtgattattttctattccatgttaaattatgattgtctattgccattttatactacaactaaaagtaataaagttttaccatcga 429  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| | |||||| ||| |||| |    
T  38507933 ctgttgaaaacgaaggtgattattttctattccatgttaaattatgattgtctattgccattttatacta------aaagaagtaaagtgttaacatc-a 38507841  T
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507840 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 38507769  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 424 - 501
Target Start/End: Original strand, 30161971 - 30162048
Alignment:
Q  424 catcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161971 catcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 30162048  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 55290138 - 55290067
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290138 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 55290067  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 535 - 639
Target Start/End: Complemental strand, 38507728 - 38507626
Alignment:
Q  535 aactatgaatcgctttgctatgatcgcactacattggttgaaacttgaaacnnnnnnnnctgtaaattataatttgctatactttattttctcttttctg 634  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  38507728 aactatgaatcgctttgctatgatcgc--tacattggttgaaacttgaaacttttttttctgtaaattataatttgctatactttattttctcttttctg 38507631  T
Q  635 tgctg 639  Q
    |||||    
T  38507630 tgctg 38507626  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 38507982 - 38507950
Alignment:
Q  278 aaaatagtagtgggagggtgacaggctcaatcg 310  Q
    ||||||| |||||||||||||||||||||||||    
T  38507982 aaaatagcagtgggagggtgacaggctcaatcg 38507950  T

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Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 420 - 501
Target Start/End: Complemental strand, 40640349 - 40640268
Alignment:
Q  420 ttaccatcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640349 ttaccatcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 40640268  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 32361901 - 32361829
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361901 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 32361829  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 32379132 - 32379060
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379132 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 32379060  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 31877289 - 31877212
Alignment:
Q  424 catcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877289 catcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31877212  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 31547809 - 31547881
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547809 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31547881  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 31544656 - 31544727
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544656 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31544727  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 31559518 - 31559589
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31559589  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 31556512 - 31556583
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  31556512 gcggggatagctcagttgggagagcgtcagattgaagatctgaaggtcgcgtgtttgatccacgctcaccgc 31556583  T

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Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 30034510 - 30034438
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034510 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 30034438  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 45868174 - 45868103
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868174 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 45868103  T

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Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 18229431 - 18229503
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229431 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 18229503  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 6493518 - 6493589
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 6493589  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 8328526 - 8328455
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328526 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 8328455  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 9596926 - 9596997
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596926 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 9596997  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 33994695 - 33994624
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994695 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 33994624  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 21281623 - 21281553
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| |||||||||    
T  21281623 gcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgc 21281553  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 38625067 - 38624995
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625067 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 38624995  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 46613935 - 46614007
Alignment:
Q  429 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46613935 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 46614007  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 32053615 - 32053544
Alignment:
Q  430 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053615 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 32053544  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 50683190 - 50683113
Alignment:
Q  424 catcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 501  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683190 catcaagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 50683113  T

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