View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_low_3 (Length: 563)
Name: NF20612_low_3
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 15152728 - 15152348
Alignment:
| Q |
10 |
aagaatattgtatattgatgggcctgatgggtttagaacttgatgagtggataatgaatttaatgaagnnnnnnnnt-tcaatgagtgctataagcatga |
108 |
Q |
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| T |
15152728 |
aagaatattgtatattgatgggcctgatgggtttagaacttgatgagtggataatgaatttaatgaagaaaaaaaaaatcaatgagtgctgtaagcatga |
15152629 |
T |
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| Q |
109 |
aggagaatattttgtaaaaaatgtgctcccccattgtcatatgttcaaatttttagttacattttggccataccaccatgtgatat-----------att |
197 |
Q |
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| T |
15152628 |
aggagaatattttgaaaaaaatgtgctcccccattgtcatatgttcaaatttttagttacattttggccataccaccatgtgatatccattattttaatt |
15152529 |
T |
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| Q |
198 |
ttattcgacatatgtgatatccattctgtaaagcaattttcttatttatgtactaaaaaagatagcaaaatataagtgatgtggcttgacatgaaatgac |
297 |
Q |
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| T |
15152528 |
ttattcgacatatgtgatatccattctgtaaagcaattttcttatttatgtactaaaaaagatagcaaaatataagtgatgtggtttgacatgaaatgac |
15152429 |
T |
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| Q |
298 |
atcgtgttaatttgatatcattttttatgaaaaataatacaacatgattagggtggtttagaaaacatagtatcttcaagagt |
380 |
Q |
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| T |
15152428 |
atcgtgttaatttgatatcattttttatgaaaaa-aatac-acatgattagggtggtttagaaaacatagtatcttcaagagt |
15152348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 411 - 545
Target Start/End: Complemental strand, 15152317 - 15152183
Alignment:
| Q |
411 |
cagaatatttgatgcaatgacaaagatttgagtaagtagtgacttttactctctttacagatgggaattaaagatgtaaaaaataaaagtctgtatttaa |
510 |
Q |
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| T |
15152317 |
cagaatatttgatgcaatgacaaagatttgaataagtagtgacttttactccctttacagatgggaattaaagatgtaaaaaataaaagtctgtatttaa |
15152218 |
T |
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| Q |
511 |
tttcatcacttaggtttaaaggtaaaaattgaaga |
545 |
Q |
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| T |
15152217 |
tttcatcacttaggtttaaaggtaaaaattgaaga |
15152183 |
T |
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