View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_low_6 (Length: 358)
Name: NF20612_low_6
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 10003049 - 10002873
Alignment:
| Q |
13 |
gagagactgtttccaatatttaaacctgtcacctcgaggttacaaaccaaaaaccttaccattgcgctaatgctcaccc----ttagaaccttgatttaa |
108 |
Q |
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| T |
10003049 |
gagagactgtttccaatatttaaacctgtcacctcgaggttacaaaccaaaaaccttaccattgtgctaacgctcacccttaattagaaccttgatttaa |
10002950 |
T |
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| Q |
109 |
ttagtccaaattaaactcggattgatatctgatgtggaaagaatgtttctaagtattgagatatgccattttcatta |
185 |
Q |
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| T |
10002949 |
ttggtccaaattaagttcggattgatatctgatgtgcagcggatgtttctaagtattgagatatgccattttcatta |
10002873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 10002478 - 10002376
Alignment:
| Q |
243 |
taaacatagttagagttttgaaatacaaatgtaaaatcattcatcttttgacatatctttcatatgcagaattaaacaaaaaaccagatgcatgttcaat |
342 |
Q |
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| T |
10002478 |
taaacatagttagtgttttgaaatacaaatgtaagattattcatctttccacgtatctttcatatgcagaattaaacagaaaaccagatgcgtgttcaat |
10002379 |
T |
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| Q |
343 |
ttg |
345 |
Q |
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| T |
10002378 |
ttg |
10002376 |
T |
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