View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_low_7 (Length: 358)
Name: NF20612_low_7
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 5443149 - 5443495
Alignment:
| Q |
9 |
gagatgaagaaaaaatcaggatgtgcattttaacaaaaggaaatcccagttggccctcctttaaacaattatattacaata------tgaatatgaatga |
102 |
Q |
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| T |
5443149 |
gagaagaagaaaaaatcaggatgtgcattttaacaaaaggaaatcccagttagccctcctttaaacaattatattacaatatgaatatgaatatgaatga |
5443248 |
T |
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| Q |
103 |
attgtcatcaatttagtattgaaaataaaaaggtactattatgtacgacgctataagtcttttatgcttcaatatgataagatgacaaacacaatcatgt |
202 |
Q |
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| T |
5443249 |
attgtcatcaatttagtattgaaaataaaaaggtactattatgtacgacgccataagtctttgatgcttcaatatgataagatgacaaacacaatcatgt |
5443348 |
T |
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| Q |
203 |
ttaccgatttattgactaaatttgattaccgtgtagaactagatct---------tagtactcaatatattagtttagacttgattcactataactccat |
293 |
Q |
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| T |
5443349 |
ttaccgatttattgattaaatttgattaccgtgtagaactagatcttaattattatagtactcaatatattagtttagacttgattcactataactccat |
5443448 |
T |
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| Q |
294 |
cccaatccaaactctcacacttatgttgaatttgaattatgtagctt |
340 |
Q |
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| T |
5443449 |
cccaatccaaactctcacacttatgttgaatttgaattatgtagctt |
5443495 |
T |
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