View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20612_low_8 (Length: 283)
Name: NF20612_low_8
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20612_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 6959082 - 6958885
Alignment:
| Q |
30 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
129 |
Q |
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| T |
6959082 |
tagagaacaaaacataatatttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcaacatctcttgaccacagtgaccactccaactgc |
6958983 |
T |
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| Q |
130 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttattttcccctcttcaacaagttt |
227 |
Q |
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| T |
6958982 |
acagctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttattttgccctcttcaacaagttt |
6958885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 6921949 - 6922176
Alignment:
| Q |
30 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
129 |
Q |
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|||| ||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6921949 |
tagataacaaaacacaatgtttgcaaactaaat-tc-cacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgc |
6922046 |
T |
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| Q |
130 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttattttcccctcttcaacaagtttct |
229 |
Q |
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| T |
6922047 |
acagctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgtattttatttttccctcttcaacaagttttt |
6922146 |
T |
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| Q |
230 |
ttagctcccccaatcttacaaagaaaaccaa |
260 |
Q |
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| T |
6922147 |
taagct-ctccgatcttacaaagaaaaccaa |
6922176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 6956263 - 6956036
Alignment:
| Q |
30 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
129 |
Q |
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|||| ||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6956263 |
tagataacaaaacacaatgtttgcaaactaaat-tc-cacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgc |
6956166 |
T |
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| Q |
130 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttattttcccctcttcaacaagtttct |
229 |
Q |
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| T |
6956165 |
acagctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgtattttatttttccctcttcaacaagttttt |
6956066 |
T |
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| Q |
230 |
ttagctcccccaatcttacaaagaaaaccaa |
260 |
Q |
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| T |
6956065 |
taagct-ctccgatcttacaaagaaaaccaa |
6956036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 35 - 262
Target Start/End: Original strand, 6969197 - 6969420
Alignment:
| Q |
35 |
aacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgcacagc |
134 |
Q |
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|||| ||||||||||||||||||||||| || |||||||||||||||||| ||||| || |||||||||||||| || ||||||||||| |||||||| |
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| T |
6969197 |
aacataacataatgtttgtaaactaaat--caaacctgcaagttggaattatttcttcttccacatctcttgaccatagcgaccactccaattgcacagc |
6969294 |
T |
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| Q |
135 |
tgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttattttcccctcttcaacaagtttctttagc |
234 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |
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| T |
6969295 |
tgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttatttttccctcttcaacgagtttcttaagc |
6969394 |
T |
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| Q |
235 |
tcccccaatcttacaaagaaaaccaaaa |
262 |
Q |
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| T |
6969395 |
t-ccccaatcttagaaa-aaaaccaaaa |
6969420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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