View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20612_low_9 (Length: 242)

Name: NF20612_low_9
Description: NF20612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20612_low_9
NF20612_low_9
[»] chr4 (17 HSPs)
chr4 (20-171)||(13763851-13764002)
chr4 (174-242)||(4415964-4416032)
chr4 (171-239)||(28501359-28501427)
chr4 (175-242)||(29520134-29520201)
chr4 (174-242)||(46949991-46950059)
chr4 (174-242)||(20455152-20455219)
chr4 (175-238)||(31937076-31937139)
chr4 (175-242)||(49373663-49373730)
chr4 (174-212)||(18882350-18882388)
chr4 (174-212)||(49793090-49793128)
chr4 (21-115)||(55151133-55151224)
chr4 (174-212)||(56432517-56432555)
chr4 (175-212)||(25124246-25124283)
chr4 (174-211)||(32899219-32899256)
chr4 (175-212)||(53564356-53564393)
chr4 (175-211)||(37639888-37639924)
chr4 (175-211)||(55563128-55563164)
[»] chr5 (9 HSPs)
chr5 (174-239)||(27873318-27873383)
chr5 (175-242)||(23286444-23286511)
chr5 (180-242)||(32478143-32478205)
chr5 (174-242)||(21239098-21239166)
chr5 (175-239)||(43060384-43060448)
chr5 (174-237)||(3028012-3028075)
chr5 (174-212)||(8949811-8949849)
chr5 (174-212)||(23260138-23260176)
chr5 (175-211)||(19571940-19571976)
[»] chr3 (8 HSPs)
chr3 (173-242)||(46845462-46845531)
chr3 (175-242)||(8321925-8321992)
chr3 (174-212)||(1111648-1111686)
chr3 (174-209)||(6784726-6784761)
chr3 (176-242)||(1572332-1572398)
chr3 (174-212)||(4759351-4759389)
chr3 (174-212)||(24087335-24087373)
chr3 (174-212)||(41392880-41392918)
[»] chr6 (7 HSPs)
chr6 (174-242)||(402591-402659)
chr6 (174-242)||(25045613-25045681)
chr6 (172-212)||(13901638-13901678)
chr6 (174-242)||(34915513-34915581)
chr6 (174-212)||(15498628-15498666)
chr6 (174-212)||(23604459-23604497)
chr6 (175-212)||(2090658-2090695)
[»] chr8 (7 HSPs)
chr8 (175-242)||(5162304-5162371)
chr8 (174-238)||(2152214-2152278)
chr8 (174-212)||(12802610-12802648)
chr8 (175-212)||(17069844-17069881)
chr8 (175-212)||(17578392-17578429)
chr8 (175-212)||(18641380-18641417)
chr8 (168-212)||(40784884-40784928)
[»] chr7 (6 HSPs)
chr7 (174-237)||(9140508-9140571)
chr7 (174-212)||(39135094-39135132)
chr7 (174-212)||(2290016-2290054)
chr7 (174-212)||(34012517-34012555)
chr7 (174-211)||(33381574-33381611)
chr7 (171-207)||(1574715-1574751)
[»] chr2 (5 HSPs)
chr2 (175-242)||(8912844-8912911)
chr2 (174-237)||(26322268-26322331)
chr2 (175-212)||(2060316-2060353)
chr2 (175-212)||(7116299-7116336)
chr2 (175-212)||(28566151-28566188)
[»] chr1 (5 HSPs)
chr1 (174-239)||(27037268-27037333)
chr1 (174-242)||(7763719-7763787)
chr1 (174-242)||(25509208-25509275)
chr1 (174-212)||(42276161-42276199)
chr1 (175-212)||(43456621-43456658)
[»] scaffold0161 (1 HSPs)
scaffold0161 (175-242)||(3438-3504)
[»] scaffold0674 (1 HSPs)
scaffold0674 (175-212)||(5151-5188)
[»] scaffold0549 (1 HSPs)
scaffold0549 (175-212)||(10182-10219)
[»] scaffold0240 (1 HSPs)
scaffold0240 (175-212)||(18497-18534)
[»] scaffold0107 (1 HSPs)
scaffold0107 (175-212)||(48654-48691)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 13764002 - 13763851
Alignment:
Q  20 ctcatatcaattcctaattttttattttaccatacttattgtaacaataatcacaacatgagttgttacagtagcaagcaaaaggtggacgagtttaaag 119  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| |     
T  13764002 ctcatatcaattcctaagtttttattttaccatactaattgtaacaataatcacaacatgacttgttacaatagcaagcaaaaggtcgacgagtttacat 13763903  T
Q  120 tccattgtggatatgctgccgtcataggtggttgtgttgccgatgccgatga 171  Q
     |||| ||||||||||  |||||||||||||||| ||||||||||| |||||    
T  13763902 cccatcgtggatatgcaaccgtcataggtggttgcgttgccgatgctgatga 13763851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 4415964 - 4416032
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  4415964 atactacctccgtccctaattataagacccttttgagaatgttttttgtccctttttataagacccctt 4416032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 28501427 - 28501359
Alignment:
Q  171 atgatactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagaccc 239  Q
    ||||||||| ||||||||||||||| ||||||||||||||||        |||||||||||||||||||    
T  28501427 atgatactacctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagaccc 28501359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 29520201 - 29520134
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  29520201 tactacctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagacccctt 29520134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 46949991 - 46950059
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        || |||||||||||||||||||    
T  46949991 atactacctccgtccctaattataagacccttttgagaatattttttgttcctttttataagacccctt 46950059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 20455219 - 20455152
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  20455219 atactacctccgtccctaattataagacccttttgagaa-tttttttgtccctttttataagacccctt 20455152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 31937076 - 31937139
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacc 238  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||    
T  31937076 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 31937139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 49373730 - 49373663
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        | ||||||||||||||||||||    
T  49373730 tactacctccgtccctaattataagacccttttgagaattttttttggccctttttataagacccctt 49373663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 18882350 - 18882388
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  18882350 atactatctccgtccctaattataagacctttttgagaa 18882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 49793090 - 49793128
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  49793090 atactacctccgtccctaattataagacccttttgagaa 49793128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 55151133 - 55151224
Alignment:
Q  21 tcatatcaattcctaattttttattttaccatacttattgtaacaataatcac-aacatgagttgttacagtagcaagcaaaaggtggacgagttt 115  Q
    ||||||||||||||  |||||| ||||||||    | |||||| ||||||||| |||||| ||||||||| |||||||| | |||||||| |||||    
T  55151133 tcatatcaattcctgttttttttttttacca----tcttgtaataataatcacaaacatgggttgttacactagcaagccagaggtggacaagttt 55151224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 56432517 - 56432555
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  56432517 atactacctccgtccctaattataagacccttttgagaa 56432555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 25124283 - 25124246
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  25124283 tactacctccgtccctaattataagacccttttgagaa 25124246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 32899256 - 32899219
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgaga 211  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  32899256 atactacctccgtccctaattataagacccttttgaga 32899219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 53564393 - 53564356
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  53564393 tactacctccgtccctaattataagacccttttgagaa 53564356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 37639924 - 37639888
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgaga 211  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  37639924 tactatctccgtccctaattataagactcttttgaga 37639888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 55563164 - 55563128
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgaga 211  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  55563164 tactacctccgtccctaattataagacccttttgaga 55563128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 27873383 - 27873318
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagaccc 239  Q
    |||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||    
T  27873383 atactatctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccc 27873318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 23286511 - 23286444
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  23286511 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 23286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 32478143 - 32478205
Alignment:
Q  180 tctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  32478143 tctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 32478205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 21239098 - 21239166
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||| ||||||||||||||||||    
T  21239098 atactacctccgtccctaattagaagacccttttgagaattttttttgtctctttttataagacccctt 21239166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 43060448 - 43060384
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagaccc 239  Q
    ||||| ||||||||||||||| ||||||||||||||||        |||||||||||||||||||    
T  43060448 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccc 43060384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 3028012 - 3028075
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagac 237  Q
    |||||| ||||||||||||||| ||||||||||||||||        |||||||||||||||||    
T  3028012 atactacctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagac 3028075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 8949811 - 8949849
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  8949811 atactacctccgtccctaattataagacccttttgagaa 8949849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 23260176 - 23260138
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  23260176 atactacctccgtccctaattataagacccttttgagaa 23260138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 19571976 - 19571940
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgaga 211  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  19571976 tactacctccgtccctaattataagacccttttgaga 19571940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 46845531 - 46845462
Alignment:
Q  173 gatactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  46845531 gatactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 46845462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 8321925 - 8321992
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  8321925 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 8321992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 1111686 - 1111648
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  1111686 atactatctccgtccctaattataagacccttttgagaa 1111648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 6784761 - 6784726
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttga 209  Q
    |||||||||||||||||||||| |||||||||||||    
T  6784761 atactatctccgtccctaattataagacccttttga 6784726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 1572332 - 1572398
Alignment:
Q  176 actatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||| ||||||||||||||| ||||||||||||||||        |||| |||||||||||||||||    
T  1572332 actaactccgtccctaattataagacccttttgagaattttttttgtccttttttataagacccctt 1572398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 4759389 - 4759351
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  4759389 atactacctccgtccctaattataagacccttttgagaa 4759351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 24087373 - 24087335
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  24087373 atactacctccgtccctaattataagacccttttgagaa 24087335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 41392918 - 41392880
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  41392918 atactacctccgtccctaattataagacccttttgagaa 41392880  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 402659 - 402591
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  402659 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 402591  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 25045681 - 25045613
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  25045681 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 25045613  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 13901638 - 13901678
Alignment:
Q  172 tgatactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  13901638 tgatactacctccgtccctaattataagacccttttgagaa 13901678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 34915581 - 34915513
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||| ||||||    
T  34915581 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagtcccctt 34915513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 15498628 - 15498666
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  15498628 atactacctccgtccctaattataagacccttttgagaa 15498666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 23604459 - 23604497
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  23604459 atactacctccgtccctaattataagacccttttgagaa 23604497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 2090658 - 2090695
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  2090658 tactacctccgtccctaattataagacccttttgagaa 2090695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 5162304 - 5162371
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  5162304 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 5162371  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 2152278 - 2152214
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacc 238  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||    
T  2152278 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 2152214  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 12802610 - 12802648
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  12802610 atactacctccgtccctaattataagacccttttgagaa 12802648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 17069881 - 17069844
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  17069881 tactacctccgtccctaattataagacccttttgagaa 17069844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 17578392 - 17578429
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  17578392 tactacctccgtccctaattataagacccttttgagaa 17578429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 18641417 - 18641380
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  18641417 tactacctccgtccctaattataagacccttttgagaa 18641380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 40784884 - 40784928
Alignment:
Q  168 atgatgatactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| |||||| ||||||||||||||| |||||| |||||||||    
T  40784884 atgataatactacctccgtccctaattataagacctttttgagaa 40784928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 9140571 - 9140508
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagac 237  Q
    |||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||    
T  9140571 atactatctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 9140508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 39135094 - 39135132
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39135094 atactacctccgtccctaattacaagacccttttgagaa 39135132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 2290054 - 2290016
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  2290054 atactacctccgtccctaattataagacccttttgagaa 2290016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 34012555 - 34012517
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  34012555 atactacctccgtccctaattataagacccttttgagaa 34012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 33381611 - 33381574
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgaga 211  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  33381611 atactacctccgtccctaattataagacccttttgaga 33381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 1574715 - 1574751
Alignment:
Q  171 atgatactatctccgtccctaattacaagaccctttt 207  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  1574715 atgatactacctccgtccctaattataagaccctttt 1574751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 8912911 - 8912844
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  8912911 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 8912844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 26322331 - 26322268
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagac 237  Q
    |||||| ||||||||||||||| ||||||||||||||||        |||||||||||||||||    
T  26322331 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 26322268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 2060316 - 2060353
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  2060316 tactacctccgtccctaattataagacccttttgagaa 2060353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 7116336 - 7116299
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  7116336 tactacctccgtccctaattataagacccttttgagaa 7116299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 28566151 - 28566188
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  28566151 tactacctccgtccctaattataagacccttttgagaa 28566188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 27037268 - 27037333
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagaccc 239  Q
    |||||| ||||||||||||||| ||||||||||||||||        |||||||||||||||||||    
T  27037268 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccc 27037333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 7763787 - 7763719
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        |||||||||||||||| |||||    
T  7763787 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagatccctt 7763719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 25509208 - 25509275
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    |||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  25509208 atactacctccgtccctaattataagacccttttgagaa-tttttttgtccctttttataagacccctt 25509275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 42276199 - 42276161
Alignment:
Q  174 atactatctccgtccctaattacaagacccttttgagaa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  42276199 atactacctccgtccctaattataagacccttttgagaa 42276161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 43456658 - 43456621
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  43456658 tactacctccgtccctaattataagacccttttgagaa 43456621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 3438 - 3504
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaannnnnnnngtccctttttataagacccctt 242  Q
    ||||| ||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||    
T  3438 tactacctccgtccctaattataagacccttttgagaa-tttttttgtccctttttataagacccctt 3504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 5151 - 5188
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  5151 tactacctccgtccctaattataagacccttttgagaa 5188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 10219 - 10182
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  10219 tactacctccgtccctaattataagacccttttgagaa 10182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 18497 - 18534
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  18497 tactacctccgtccctaattataagacccttttgagaa 18534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 48654 - 48691
Alignment:
Q  175 tactatctccgtccctaattacaagacccttttgagaa 212  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  48654 tactacctccgtccctaattataagacccttttgagaa 48691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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