View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20613_high_5 (Length: 315)

Name: NF20613_high_5
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20613_high_5
NF20613_high_5
[»] chr4 (3 HSPs)
chr4 (20-297)||(20245824-20246101)
chr4 (102-253)||(13986208-13986359)
chr4 (156-248)||(18252201-18252293)
[»] chr1 (2 HSPs)
chr1 (156-273)||(49642812-49642929)
chr1 (156-197)||(9798705-9798746)
[»] scaffold0164 (2 HSPs)
scaffold0164 (156-273)||(18504-18621)
scaffold0164 (168-273)||(28884-28989)
[»] chr8 (1 HSPs)
chr8 (156-273)||(15191353-15191470)
[»] chr3 (4 HSPs)
chr3 (156-273)||(53976371-53976488)
chr3 (102-253)||(52771248-52771399)
chr3 (102-253)||(31196914-31197065)
chr3 (171-216)||(39570815-39570860)
[»] scaffold0014 (1 HSPs)
scaffold0014 (102-253)||(97558-97709)
[»] scaffold0013 (1 HSPs)
scaffold0013 (102-253)||(250675-250826)
[»] chr7 (1 HSPs)
chr7 (102-253)||(16254738-16254889)
[»] chr6 (2 HSPs)
chr6 (102-253)||(26129458-26129609)
chr6 (153-216)||(29155508-29155571)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 20246101 - 20245824
Alignment:
Q  20 ggaccttcttctattgtgattacaccggttttgaatcactctaattatcacgtttgggctcattcaaatgaggaaaactcatggaggtaagaataagttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20246101 ggaccttcttctattgtgattacaccggttttgaatcactctaattatcacgtttgggctcattcaaatgaggaaaactcatggaggtaagaataagttt 20246002  T
Q  120 aatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagct 219  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  20246001 gatttggtttatggttcaattctagtcccattggagtttgatccatgtttcaaggcttggaatcattgcaacatgcttatgcattcttggattatgagct 20245902  T
Q  220 ctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatgcatctaatgtgttggaacaaaatt 297  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20245901 cgatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatgtatgtaatgtgttggaacaaaatt 20245824  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 13986208 - 13986359
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| ||  |||||||||||||| ||||||| || ||||||| ||||||||||||||| |    
T  13986208 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtac 13986307  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  13986308 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 13986359  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 18252201 - 18252293
Alignment:
Q  156 tttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcatt 248  Q
    |||||||||  |||||| |||||||||| |||||| ||||| ||| ||| |||||||||||  ||| | ||||| || ||||||| |||||||    
T  18252201 tttgatccaaatttcaaagcttggaatcgttgcaatatgctcgtgtattcttggattatgaattctgttgaagattcaattgcacaaagcatt 18252293  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 49642929 - 49642812
Alignment:
Q  156 tttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttcc 255  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| ||||    
T  49642929 tttgatccaaatttcaaggcttggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcc 49642830  T
Q  256 ttaaaaatgaaattgatg 273  Q
    | |||||||  |||||||    
T  49642829 tgaaaaatgccattgatg 49642812  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 9798746 - 9798705
Alignment:
Q  156 tttgatccatgtttcaaggcttggaatcattgcaacatgctt 197  Q
    ||||||||| |||| |||||||||||||| ||||||||||||    
T  9798746 tttgatccaagttttaaggcttggaatcagtgcaacatgctt 9798705  T

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Target: scaffold0164 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 18621 - 18504
Alignment:
Q  156 tttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttcc 255  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| ||||    
T  18621 tttgatccaaatttcaaggcttggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcc 18522  T
Q  256 ttaaaaatgaaattgatg 273  Q
    |  ||||||  |||||||    
T  18521 tggaaaatgccattgatg 18504  T

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Target: scaffold0164; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 28989 - 28884
Alignment:
Q  168 ttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaa 267  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| |||||  ||||||  |    
T  28989 ttcaaggcttggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgcca 28890  T
Q  268 ttgatg 273  Q
    ||||||    
T  28889 ttgatg 28884  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 15191353 - 15191470
Alignment:
Q  156 tttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttcc 255  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| ||||    
T  15191353 tttgatccaaatttcaaggcttggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcc 15191452  T
Q  256 ttaaaaatgaaattgatg 273  Q
    |  ||||||  |||||||    
T  15191453 tggaaaatgccattgatg 15191470  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 53976371 - 53976488
Alignment:
Q  156 tttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttcc 255  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| ||||    
T  53976371 tttgatccaaatttcaaggcttggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcc 53976470  T
Q  256 ttaaaaatgaaattgatg 273  Q
    |  ||||||  |||||||    
T  53976471 tggaaaatgccattgatg 53976488  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 52771248 - 52771399
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| ||  |||||||||||||| ||||||| || ||||||| ||||||||||||||| |    
T  52771248 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtac 52771347  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  52771348 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 52771399  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 31197065 - 31196914
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| |   |||||||||||||| ||||||| || ||||||| ||||||||||||||| |    
T  31197065 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcttatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtac 31196966  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  31196965 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 31196914  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 39570815 - 39570860
Alignment:
Q  171 aaggcttggaatcattgcaacatgcttgtgcatttttggattatga 216  Q
    |||||||||||||||||||| ||| |||||||||  ||||||||||    
T  39570815 aaggcttggaatcattgcaatatgtttgtgcattcatggattatga 39570860  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 97709 - 97558
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| ||  |||||||||||||| ||||||| || ||||||| ||||||||||||||| |    
T  97709 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtac 97610  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  97609 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 97558  T

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Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 250826 - 250675
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| ||  |||||||||||||| ||||||| || ||||||| ||||||||||||||| |    
T  250826 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtac 250727  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  250726 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 250675  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 16254738 - 16254889
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| ||  |||||||||||||| ||||||| || ||||||| ||| |||||||||||||    
T  16254738 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgtaacatgcttgtgc 16254837  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  16254838 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 16254889  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 26129458 - 26129609
Alignment:
Q  102 ggaggtaagaataagtttaatttggtttatggttcaattctagtcccattggaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgc 201  Q
    ||||| ||||| |||||| |||| ||  |||| ||||||| ||| ||  |||||||||||||| ||||||| || ||||||| ||| |||||||||||||    
T  26129458 ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgtaacatgcttgtgc 26129557  T
Q  202 atttttggattatgagctctatcgaagaatccattgcactaagcattgtgtt 253  Q
    |||  ||||| ||||  ||| | ||||| || |||||||  || ||||||||    
T  26129558 attcatggatcatgaattctgttgaagattctattgcacagagtattgtgtt 26129609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 29155571 - 29155508
Alignment:
Q  153 gaatttgatccatgtttcaaggcttggaatcattgcaacatgcttgtgcatttttggattatga 216  Q
    |||||||||||  |||||||||| || |||| |||||||||||||||||||| |||||| ||||    
T  29155571 gaatttgatcctagtttcaaggcgtgaaatcgttgcaacatgcttgtgcattcttggatcatga 29155508  T

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