View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20613_low_1 (Length: 565)

Name: NF20613_low_1
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20613_low_1
NF20613_low_1
[»] chr4 (2 HSPs)
chr4 (28-360)||(37029261-37029589)
chr4 (364-449)||(48292031-48292117)
[»] chr3 (1 HSPs)
chr3 (364-565)||(34948721-34948921)
[»] chr8 (4 HSPs)
chr8 (505-565)||(5726536-5726596)
chr8 (416-461)||(5726462-5726507)
chr8 (377-453)||(11630665-11630741)
chr8 (364-401)||(5726424-5726461)
[»] chr7 (3 HSPs)
chr7 (364-400)||(16650621-16650657)
chr7 (364-400)||(17624981-17625017)
chr7 (364-449)||(40066729-40066808)
[»] chr2 (1 HSPs)
chr2 (381-453)||(10376365-10376437)
[»] chr1 (1 HSPs)
chr1 (359-400)||(38114049-38114090)
[»] chr6 (1 HSPs)
chr6 (377-467)||(12798612-12798701)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 360
Target Start/End: Original strand, 37029261 - 37029589
Alignment:
Q  28 ccactttgtcagttgataatcgatattaatttaactttcaatgaacgattccaaactcaaagacgttcctctgcatggcgatgacaattttccttccatg 127  Q
    |||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37029261 ccactttgtcagttgataatcgatatt----taactttcaatgaacgatcccaaactcaaagacgttcctctgcatggcgatgacaattttccttccatg 37029356  T
Q  128 ctggatttatgaatatatttgagagtttggtggaaaccattttagagtttttgatgagttggacaaatatttagaagatatagaaaagttgtttaaataa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37029357 ctggatttatgaatatatttgagagtttggtggaaaccattttagagtttttgatgagttggacaaatatttagaagatatagaaaagttgtttaaataa 37029456  T
Q  228 ttgacaagtacaaaacattgtaaaaattatgcgggattccttttaaggaacttaaataaatgtaatggatgcagatgcattgaagttactccaaatcgac 327  Q
    || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37029457 ttaagaagtacaaaacattgtaaaaattatgcgggattccttttaaagaacttaaataaatgtaatggatgcagatgcattgaagttactccaaatagac 37029556  T
Q  328 acgatggacaacatgatattgtggtatcaaatt 360  Q
    ||||||||||||||||||||||||||| |||||    
T  37029557 acgatggacaacatgatattgtggtatgaaatt 37029589  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 48292117 - 48292031
Alignment:
Q  364 taaagattgatgaacacccttttaattcatccaccccatacaccactgccacgtgaca---atttattttgtcttcttcaaccaaaata 449  Q
    ||||||||||||||||||||||||||||||||| ||| |  |||||||| ||||| ||    ||| |||||||||||||||||||||||    
T  48292117 taaagattgatgaacacccttttaattcatccatcccgt--accactgctacgtggcagtttttttttttgtcttcttcaaccaaaata 48292031  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 565
Target Start/End: Original strand, 34948721 - 34948921
Alignment:
Q  364 taaagattgatgaacacccttttaattcatccaccccatacaccactgccacgtgacaatttattttgtcttcttcaaccaaaataata---tataaaat 460  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||   ||||||||    
T  34948721 taaagattgatgaacacccttttaattcattcaccctatacaccactgccatgtggcaatttattttgtcttcttcaaccaaaataatatagtataaaat 34948820  T
Q  461 ataacctttacattcttttgttccnnnnnnnnnnnnnnnnnntccccttttctctgt--tttctcttcaccctctcccccacctcagaccttcaccctct 558  Q
    ||||| ||| ||||||||||||||                  ||||||||||| |||  | |||||||||||||||||||||||||||||||||||||||    
T  34948821 ataacatttccattcttttgttcc------aaaaaaaaaaattccccttttctttgttctctctcttcaccctctcccccacctcagaccttcaccctct 34948914  T
Q  559 gtcatct 565  Q
     ||||||    
T  34948915 atcatct 34948921  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 505 - 565
Target Start/End: Original strand, 5726536 - 5726596
Alignment:
Q  505 cccttttctctgttttctcttcaccctctcccccacctcagaccttcaccctctgtcatct 565  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  5726536 cccttttctctgttctcacttcaccctctcccccacctcagaccttcaccctctgtcatct 5726596  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 5726462 - 5726507
Alignment:
Q  416 gtgacaatttattttgtcttcttcaaccaaaataatatataaaata 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5726462 gtgacaatttattttgtcttcttcaaccaaaataatatataaaata 5726507  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 11630741 - 11630665
Alignment:
Q  377 acacccttttaattcatccaccccatacaccactgccac-gtgacaatttattttgtcttcttcaaccaaaataatat 453  Q
    ||||||||||||| |||||||||| ||||||||| |||| ||| |||||| ||||||||| ||||| |||||||||||    
T  11630741 acacccttttaatccatccaccccttacaccact-ccactgtggcaattttttttgtcttattcaaacaaaataatat 11630665  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 5726424 - 5726461
Alignment:
Q  364 taaagattgatgaacacccttttaattcatccacccca 401  Q
    |||||||||||||||||||||||||||||  |||||||    
T  5726424 taaagattgatgaacacccttttaattcaatcacccca 5726461  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 16650657 - 16650621
Alignment:
Q  364 taaagattgatgaacacccttttaattcatccacccc 400  Q
    |||||||||||||||||||||||||||||||||||||    
T  16650657 taaagattgatgaacacccttttaattcatccacccc 16650621  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 17625017 - 17624981
Alignment:
Q  364 taaagattgatgaacacccttttaattcatccacccc 400  Q
    |||||||||||||||||||||||||||||||||||||    
T  17625017 taaagattgatgaacacccttttaattcatccacccc 17624981  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 40066808 - 40066729
Alignment:
Q  364 taaagattgatgaacacccttttaattcatccaccccatacaccactgccacgtgacaatttattttgtcttcttcaaccaaaata 449  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||||||| ||||| || ||| |||    ||||||||||||||||    
T  40066808 taaagattgatgaacaaccttttaattcatccactccat--accactgctacgtggcatttttttt----ttcttcaaccaaaata 40066729  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 10376437 - 10376365
Alignment:
Q  381 ccttttaattcatccaccccatacaccactgccac-gtgacaatttattttgtcttcttcaaccaaaataatat 453  Q
    ||||||||| |||||||||| ||||||||| |||| ||| |||||| ||||||||| ||||| |||||||||||    
T  10376437 ccttttaatccatccaccccttacaccact-ccactgtggcaattttttttgtcttattcaaacaaaataatat 10376365  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 38114090 - 38114049
Alignment:
Q  359 ttggataaagattgatgaacacccttttaattcatccacccc 400  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  38114090 ttgggtaaaaattgatgaacacccttttaattcatccacccc 38114049  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 467
Target Start/End: Complemental strand, 12798701 - 12798612
Alignment:
Q  377 acacccttttaattcatccaccccatacaccactgccac-gtgacaa-tttattttgtcttcttcaaccaaaataatatataaaatataacct 467  Q
    ||||||||||||| |||||| ||| ||||||||| ||||  |||||| ||| ||||||||| ||||| |||||||  ||||||||||||||||    
T  12798701 acacccttttaatccatccatcccttacaccact-ccactatgacaatttttttttgtcttattcaaacaaaata--atataaaatataacct 12798612  T

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