View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20613_low_10 (Length: 259)
Name: NF20613_low_10
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20613_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 483795 - 484042
Alignment:
| Q |
1 |
agcatcctttcgcttctttcttcgtctgtttcattttgttattggaagacacagttatagaaatgaagtaaaagagaactaagactagttagttatatta |
100 |
Q |
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| T |
483795 |
agcatcctttcgcttctttcttcgtctgtttcattttgttattggaagacacagttatagaaatgaagtaaaagagaactaagactagttagttatatta |
483894 |
T |
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| Q |
101 |
g--------ttgttcttctcattaactatataagccttacatatcccttgatgtaattaattctctaatcatggatttaattttcattttacttttctct |
192 |
Q |
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| T |
483895 |
gtttgttagttgttcttctcattaactatataagccttacatatcccttgatgtaattaattctctaatcatggatttaattttcattttacttttctct |
483994 |
T |
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| Q |
193 |
tatcaatgacttctattaagaatagtaacaagtttcttataagaattg |
240 |
Q |
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| T |
483995 |
tatcaatgacttctattaagaatagtaacaagtttcttataagaattg |
484042 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 34239792 - 34239828
Alignment:
| Q |
182 |
tacttttctcttatcaatgacttctattaagaatagt |
218 |
Q |
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| T |
34239792 |
tacttttatcttatcaatgacttctattaagaatagt |
34239828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 35905311 - 35905356
Alignment:
| Q |
170 |
taattttcattttacttttctcttatcaatgacttctattaagaata |
216 |
Q |
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| T |
35905311 |
taattttcattttactttt-tcttatcaaagacttctatcaagaata |
35905356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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