View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20613_low_11 (Length: 250)
Name: NF20613_low_11
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20613_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 19641640 - 19641879
Alignment:
| Q |
13 |
aatattatgctaataat-gtgtgtgccttggtttcgataagataattac-atgaaactcactttagcctcagctttcttcattgtcttaatcatataacg |
110 |
Q |
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| T |
19641640 |
aatattatgctaataatcgtgtgtgccttggtttcgataagataactagtatgaaactcactttagcctcagctttcttcattgtcttaatcatataacg |
19641739 |
T |
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| Q |
111 |
gtcatcattggtcaagtaaaagaagcttccactttttccaggcgaagaaagttcgcgcagcgcatcatttccacatatggataacatgtaatcagctgca |
210 |
Q |
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| T |
19641740 |
gtcatcattggtcaagtaaaagaagcttccactttttccaggcgaagaaagttcgcgcagcgcatcatttccacatatggataacatgtaatcagctgca |
19641839 |
T |
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| Q |
211 |
tccaccttgaatagcttcctaagagttctaagggaatttt |
250 |
Q |
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| T |
19641840 |
tccaccttgaatagcttcctaagagttctaaggaaatttt |
19641879 |
T |
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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 35258252 - 35258078
Alignment:
| Q |
62 |
tgaaactcactttagcctcagctttcttcattgtcttaatcatataacggtcatcattggtcaagtaaaagaagcttccactttttccaggcgaagaaag |
161 |
Q |
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| T |
35258252 |
tgaaactcactttcacttcagcttttctcattgtctttatcatgtatcggtcatcgttggttaagtaaaagaagcttccactttttccaggtgaggaaag |
35258153 |
T |
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| Q |
162 |
ttcgcgcagcgcatcatttccacatatggataacatgtaatcagctgcatccaccttgaatagcttcctaagagt |
236 |
Q |
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| T |
35258152 |
ttcgcgaagagcatcatttccacatatggaaagcatgtaatcagctggatccaccttgaatagcttcctgagagt |
35258078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 4195271 - 4195109
Alignment:
| Q |
65 |
aactcactttagcctcagctttcttcattgtcttaatcatataacggtcatcattggtcaagtaaaagaagcttccactttttccaggcgaagaaagttc |
164 |
Q |
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| T |
4195271 |
aactcacttttacttctgctttcttcatggttttgatcatataccggtcatcgttcgtcaaatagaaaaagcttccactttttccaggagatgagagttc |
4195172 |
T |
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| Q |
165 |
gcgcagcgcatcatttccacatatggataacatgtaatcagctgcatccaccttgaatagctt |
227 |
Q |
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| T |
4195171 |
ccgaagagcttcattcccacatattgataacatgtaatcagcaggatcaactttgaacagctt |
4195109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 32938511 - 32938401
Alignment:
| Q |
120 |
ggtcaagtaaaagaagcttccactttttccaggcgaagaaagttcgcgcagcgcatcatttccacatatggataacatgtaatcagctgcatccaccttg |
219 |
Q |
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| T |
32938511 |
ggtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgagggcagcatttccgcaaatagctaacatgtaatcagcaggatccacctga |
32938412 |
T |
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| Q |
220 |
aatagcttcct |
230 |
Q |
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| T |
32938411 |
aatcgcttcct |
32938401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 44598319 - 44598351
Alignment:
| Q |
126 |
gtaaaagaagcttccactttttccaggcgaaga |
158 |
Q |
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| T |
44598319 |
gtaaaagaagcttccactttttccaggagaaga |
44598351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 14519005 - 14519142
Alignment:
| Q |
84 |
tttcttcattgtcttaatcatataacggtcatcattggtcaagtaaaagaagcttccactttttccaggcgaagaaagttcgcgcagcgcatcatttcca |
183 |
Q |
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| T |
14519005 |
tttcttcatggtctttatcatgtatcggtcatcgttcgtcaaataaaaaaagcttccactttttccaggggaggagagctctcgaagggcgtcattccca |
14519104 |
T |
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| Q |
184 |
catatggataacatgtaatcagctgcatccaccttgaa |
221 |
Q |
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| T |
14519105 |
cataatgatatcatgtaatcagctggatctactttgaa |
14519142 |
T |
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