View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20613_low_17 (Length: 207)
Name: NF20613_low_17
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20613_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 3664039 - 3664206
Alignment:
| Q |
22 |
aaaacaaaaaccttgaaattttcaaaacaaccttgtttatttttccgacatagatcggaaaatttcaaaaccttaatttttccgaagatgatgcacatga |
121 |
Q |
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| T |
3664039 |
aaaacaaaaaccttgaaattttcaaaacaaccttgtttatttttccgacatagatcggaaaatttcaaaaccttaatttttccgaagatgatgcacatga |
3664138 |
T |
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| Q |
122 |
cattatattggggaaaaaacgtgacactattgtttgattcatggaaaaccaattcatggacgagttat |
189 |
Q |
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| T |
3664139 |
cattatattggggaaaaaacgtgacactattatttgattcatggaaaaccaattcatggacgagttat |
3664206 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 48558240 - 48558155
Alignment:
| Q |
104 |
cgaagatgatgcacatgacattatattggggaaaaaacgtgacactattgtttgattcatggaaaaccaattcatggacgagttat |
189 |
Q |
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| T |
48558240 |
cgaagatgatgcacatgactttctactggagcaaaaaagtgacactccttttcgattcatggaaaaccgattcatggacgagttat |
48558155 |
T |
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