View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20613_low_2 (Length: 558)

Name: NF20613_low_2
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20613_low_2
NF20613_low_2
[»] chr8 (2 HSPs)
chr8 (186-549)||(37436337-37436696)
chr8 (17-182)||(37436143-37436308)
[»] chr7 (3 HSPs)
chr7 (380-549)||(477966-478130)
chr7 (392-481)||(21978947-21979036)
chr7 (384-458)||(28195315-28195390)
[»] chr1 (5 HSPs)
chr1 (380-549)||(35812152-35812317)
chr1 (383-458)||(12429308-12429383)
chr1 (382-458)||(20990321-20990397)
chr1 (380-458)||(12698908-12698986)
chr1 (392-425)||(15386443-15386476)
[»] chr4 (2 HSPs)
chr4 (380-461)||(33818872-33818953)
chr4 (380-458)||(44203649-44203727)
[»] chr3 (2 HSPs)
chr3 (464-549)||(28144874-28144959)
chr3 (464-549)||(28080394-28080475)
[»] chr5 (1 HSPs)
chr5 (380-443)||(13575696-13575759)
[»] chr2 (2 HSPs)
chr2 (450-549)||(22650263-22650360)
chr2 (380-455)||(41454893-41454968)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 186 - 549
Target Start/End: Original strand, 37436337 - 37436696
Alignment:
Q  186 cttcaataagagttatgataatattggcttccttatta-gggtgaaagattgtagcgatagtgaggttgtaagtttaaacctctgttgcatatgtatggg 284  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  37436337 cttcaataagagttatgataatattggcttccttattaagggtgaaagattgtagcgatagtgaggttgtaagttcaaacctatgttgcataggtatggg 37436436  T
Q  285 tacagtacctggtatgagaatatgacaattttnnnnnnnttaaggtacaagtacgtcaataaaatcatgaggnnnnnnnncatagaatatatatcagagc 384  Q
    |||| |    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||        |||||||||||||| |||||    
T  37436437 tacaat----ggtatgagaatatgacaattttaaaaaaattaaggtacaagtacgtcaataaaatcatgaggttttttt-catagaatatatattagagc 37436531  T
Q  385 taaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgcacat 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37436532 taaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgcacat 37436631  T
Q  485 agaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 549  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37436632 ataacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 37436696  T

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Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 37436143 - 37436308
Alignment:
Q  17 caccatcttctctttccttcaactcttcatcttcaccattttgaccttcttacatctctaaaactagttgatactttaagtagattgatacatacgaatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37436143 caccatcttctctttccttcaactcttcatcttcaccattttgaccttcttacatctctaaaactagttgatactttaagtagattgatacatacgaatc 37436242  T
Q  117 aaacatagacacgaaaatcatacgtaaatattgataataacttaagaaaatgaaataattaaatat 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37436243 aaacatagacacgaaaatcatacgtaaatattgataataatttaagaaaatgaaataattaaatat 37436308  T

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Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 380 - 549
Target Start/End: Original strand, 477966 - 478130
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatg 479  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||  |     ||||||||||||||    
T  477966 agagctaaattcttcaatttacaacaaaagcatcacgataagagtttaaaaatttgaaaattagtgttggttacaacagca-----aaaaaactcatatg 478060  T
Q  480 cacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 549  Q
    |||  | |||| |||||| ||||||||||||||| ||||||||| ||||||||| ||| |||||||||||    
T  478061 cacgcataacactatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataat 478130  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 392 - 481
Target Start/End: Original strand, 21978947 - 21979036
Alignment:
Q  392 ttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatgca 481  Q
    ||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||| || ||  | ||||||||||||||||    
T  21978947 ttcaatttacaacaaaaacatcatgataaaagtttaaaaagctgaaaactagtgttggttacaaaaaaaaataaaaaaaactcatatgca 21979036  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 28195390 - 28195315
Alignment:
Q  384 ctaaatttttcaatttacaacaaaaa-catcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 458  Q
    ||||||| ||||| || ||||||||| |||||| ||| ||||||| ||||| ||||||||| ||||||||||||||    
T  28195390 ctaaattcttcaactttcaacaaaaaacatcacaatagaagtttaaaaagtcgaaaattagagttggttacaacaa 28195315  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 380 - 549
Target Start/End: Original strand, 35812152 - 35812317
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataacaacaaaaaactcatatg 479  Q
    |||||| |||| |||||||||||||||||| || |||||||||||||| ||||| ||||| ||| |||||||||||||| ||    | |||||||| |||    
T  35812152 agagctgaattcttcaatttacaacaaaaatattacgataaaagtttaaaaagtcgaaaactagagttggttacaacaacaa----ataaaactcaaatg 35812247  T
Q  480 cacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 549  Q
    |||||| |||| ||||||||||||||||| || | |||| || | ||||||| ||||| | |||||||||    
T  35812248 cacatacaacactatattgtcatattaatctataagagagagccacaatttttactcacaatagaataat 35812317  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 383 - 458
Target Start/End: Complemental strand, 12429383 - 12429308
Alignment:
Q  383 gctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 458  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||| ||||| ||||||||  |||||||| |||||    
T  12429383 gctaaattcttctatttacatcaaaaacatcacgataaaagtttaaaaagtcgaaaattaaagttggttataacaa 12429308  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 20990321 - 20990397
Alignment:
Q  382 agctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 458  Q
    ||||||||| ||||||||||||||||| |||||  |||||| |||| |||||||||||| || ||||||| ||||||    
T  20990321 agctaaattcttcaatttacaacaaaaccatcataataaaattttaaaaagttgaaaatcagagttggtttcaacaa 20990397  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 12698986 - 12698908
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 458  Q
    |||||||| || |||||||||| | ||||||| || |||||||||||| ||| |  |||||||| ||||| ||||||||    
T  12698986 agagctaagttcttcaatttacgataaaaacagcaagataaaagtttaaaaactcaaaaattagagttggatacaacaa 12698908  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 15386443 - 15386476
Alignment:
Q  392 ttcaatttacaacaaaaacatcacgataaaagtt 425  Q
    |||||||||||||||||||||||| |||||||||    
T  15386443 ttcaatttacaacaaaaacatcacaataaaagtt 15386476  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 33818953 - 33818872
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaataa 461  Q
    ||||||||||| |||||||| |||||||||||||| |  |||| |||| ||||| ||| ||||| ||||| |||||||||||    
T  33818953 agagctaaattcttcaatttgcaacaaaaacatcaagccaaaaatttaaaaagtagaatattagagttggctacaacaataa 33818872  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 44203649 - 44203727
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaacaa 458  Q
    |||| |||||| ||||| | |||||||||||| ||| |||||| || | |||||||||| |||| ||||||||||||||    
T  44203649 agagataaattcttcaactgacaacaaaaacagcacaataaaaattaaaaaagttgaaatttagagttggttacaacaa 44203727  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 549
Target Start/End: Complemental strand, 28144959 - 28144874
Alignment:
Q  464 acaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 549  Q
    ||||||||||| |||||| ||| || | |||||| ||||||||||| | | ||||||||| ||||||||| ||| | |||||||||    
T  28144959 acaaaaaactcctatgcaaatataatactatattatcatattaataaataagagaaagtcacaattttcaatcacaatagaataat 28144874  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 549
Target Start/End: Complemental strand, 28080475 - 28080394
Alignment:
Q  464 acaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 549  Q
    ||||||||||| |||||||||| || | |||||| ||||||    ||| | ||||||||| ||||||||||||| | |||||||||    
T  28080475 acaaaaaactcctatgcacatataaaactatattatcatat----atataagagaaagtcacaattttcactcacaatagaataat 28080394  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 13575696 - 13575759
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattag 443  Q
    ||||||||||| || || |||||||||||||||||||||| || |||| |||||  ||||||||    
T  13575696 agagctaaattctttaacttacaacaaaaacatcacgatagaactttaaaaagtcaaaaattag 13575759  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 549
Target Start/End: Original strand, 22650263 - 22650360
Alignment:
Q  450 ttacaacaataacaacaaaaaactcatatgcacatagaacaatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataat 549  Q
    ||||||||| ||||| |||||||||| ||||||||| || | |||||  | ||||||||||| |  ||||| || ||||||||||||||| |||||||||    
T  22650263 ttacaacaacaacaa-aaaaaactcagatgcacatataatactatata-tgatattaatatataaaagaaaatcacaattttcactcataatagaataat 22650360  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 455
Target Start/End: Complemental strand, 41454968 - 41454893
Alignment:
Q  380 agagctaaatttttcaatttacaacaaaaacatcacgataaaagtttagaaagttgaaaattagtgttggttacaa 455  Q
    |||| |||||| ||| ||| |||||||||| ||||| ||| ||||||| ||||| |||| |||| |||||||||||    
T  41454968 agagttaaattcttcgattcacaacaaaaaaatcacaatagaagtttaaaaagtcgaaatttagagttggttacaa 41454893  T

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