View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20613_low_3 (Length: 394)

Name: NF20613_low_3
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20613_low_3
NF20613_low_3
[»] chr4 (1 HSPs)
chr4 (19-381)||(36366474-36366844)
[»] chr2 (4 HSPs)
chr2 (93-194)||(2681791-2681892)
chr2 (272-367)||(2681973-2682068)
chr2 (94-196)||(2672709-2672811)
chr2 (123-193)||(37713572-37713642)
[»] chr3 (3 HSPs)
chr3 (94-195)||(3103478-3103579)
chr3 (86-195)||(3123009-3123118)
chr3 (123-196)||(5488405-5488478)
[»] chr8 (7 HSPs)
chr8 (114-180)||(15697114-15697180)
chr8 (123-180)||(15703512-15703569)
chr8 (116-193)||(15764188-15764265)
chr8 (123-196)||(23560287-23560360)
chr8 (345-381)||(4120446-4120482)
chr8 (114-194)||(15805167-15805247)
chr8 (113-193)||(15813007-15813087)
[»] chr1 (1 HSPs)
chr1 (154-198)||(36311183-36311227)
[»] chr7 (3 HSPs)
chr7 (119-196)||(20167903-20167980)
chr7 (119-196)||(20285109-20285186)
chr7 (119-196)||(20294826-20294903)
[»] chr5 (1 HSPs)
chr5 (129-193)||(482820-482884)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 36366844 - 36366474
Alignment:
Q  19 ataaagcaactcttccacatacatgaccaagaagatttaattctttgtttgcagaatagaaacctcggttcttttttccacttatgatttccatcacaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36366844 ataaagcaactcttccacatacatgaccaagaagatttaattctttgtttgcagaatagaaacctcggttcttttttccacttatgatttccatcacaag 36366745  T
Q  119 aacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgcacgtagaaaaattgttcataaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36366744 aacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgcacgtagaaaaattgttcatagat 36366645  T
Q  219 tgta--------agatgattattaagttcgactcttttggagtggtagagtgctccttaggtacttactatgttccaacaactctaactgtatttgcctc 310  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36366644 tgtaacatgattagatgattattaagttcgactcttttggagtggtagagtgctccttaggtacttactatgttccaacaactctaactgtatttgcctc 36366545  T
Q  311 tgtctgatccgtgccaaatattcttgccatcccgaagtctgatatctttggattcatctctccatcaagta 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36366544 tgtctgatccgtgccaaatattcttgccatcccgaagtctgatatctttggattcatctctccatcaagta 36366474  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 2681791 - 2681892
Alignment:
Q  93 tttccacttatgatttccatcacaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccac 192  Q
    |||||||||||||| || | ||||||||| ||||| || |||||||| ||||| ||||||||| |||| ||||||||||| || ||||||||||||||||    
T  2681791 tttccacttatgatctctagcacaagaactccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggagacatatagccac 2681890  T
Q  193 tg 194  Q
    ||    
T  2681891 tg 2681892  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 2681973 - 2682068
Alignment:
Q  272 tacttactatgttccaacaactctaactgtatttgcctctgtctgatccgtgccaaatattcttgccatcccgaagtctgatatctttggattcat 367  Q
    |||| ||||||||||||||||||| | ||||||||| || || |||||  ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  2681973 tactcactatgttccaacaactctcagtgtatttgcttcagtttgatctctgccaaatattctagccatcccaaagtctgatatttttggattcat 2682068  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 2672811 - 2672709
Alignment:
Q  94 ttccacttatgatttccatcacaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 193  Q
    |||||||||||||||| | ||| ||||| |||||||||||||||||||||||| | || ||   |||| |||| ||||| |||||||||||||| || ||    
T  2672811 ttccacttatgatttctagcacgagaactccaaaactgaaaacatcagatttcgcagaaaaatatccacccattgcatattctggagacatatatccgct 2672712  T
Q  194 gca 196  Q
    |||    
T  2672711 gca 2672709  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 37713572 - 37713642
Alignment:
Q  123 ccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 193  Q
    ||||| || |||||||| ||||| | ||| |||| |||||||| ||||||||||||||||||||| |||||    
T  37713572 ccaaagctaaaaacatctgatttgattgaaaagaatccatccaaagcatactctggagacatatatccact 37713642  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 3103579 - 3103478
Alignment:
Q  94 ttccacttatgatttccatcacaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 193  Q
    ||||||| ||||| || | || |||||||||||| ||||||||||| || || ||||| || | ||| ||||||||||| ||||||| |||||| |||||    
T  3103579 ttccactgatgatctctagcaaaagaacaccaaagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccact 3103480  T
Q  194 gc 195  Q
    ||    
T  3103479 gc 3103478  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 3123118 - 3123009
Alignment:
Q  86 gttcttttttccacttatgatttccatcacaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacata 185  Q
    |||| |||||||||| ||||| || | || |||||| ||||| ||||||||||| || |||||||| || |  || || |||||||| ||||||| |||     
T  3123118 gttcctttttccactgatgatctctagcaaaagaacgccaaagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccatg 3123019  T
Q  186 tagccactgc 195  Q
    || |||||||    
T  3123018 tatccactgc 3123009  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 5488405 - 5488478
Alignment:
Q  123 ccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgca 196  Q
    ||||| ||||||||||||||||| | |||||||  |||||||   ||||| ||||||| |||||| ||||||||    
T  5488405 ccaaagctgaaaacatcagattttattgagaaggatccatccgctgcatattctggaggcatatatccactgca 5488478  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 15697114 - 15697180
Alignment:
Q  114 acaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggag 180  Q
    |||||||| ||||| ||||||||||| ||||||||||| || | |||| |||||||||| |||||||    
T  15697114 acaagaactccaaagctgaaaacatcggatttcactgaaaataatccagccatagcatattctggag 15697180  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 15703512 - 15703569
Alignment:
Q  123 ccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggag 180  Q
    ||||| || |||||||||||||||||||| || | |||| |||||||||| |||||||    
T  15703512 ccaaagctaaaaacatcagatttcactgaaaataatccagccatagcatattctggag 15703569  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 15764188 - 15764265
Alignment:
Q  116 aagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 193  Q
    |||||| ||||||||||||||||| |||||||| || || |  ||| |||||||||| ||||||| ||| || |||||    
T  15764188 aagaactccaaaactgaaaacatcggatttcaccgaaaataacccagccatagcatattctggagccatgtatccact 15764265  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 23560287 - 23560360
Alignment:
Q  123 ccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgca 196  Q
    ||||||||||| |||||||||||||| || || | |||||||  |||||| ||||| | ||| |||||||||||    
T  23560287 ccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgtagccactgca 23560360  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 4120446 - 4120482
Alignment:
Q  345 aagtctgatatctttggattcatctctccatcaagta 381  Q
    |||||||||||||||||| |||| |||||||||||||    
T  4120446 aagtctgatatctttggaatcatgtctccatcaagta 4120482  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 15805167 - 15805247
Alignment:
Q  114 acaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactg 194  Q
    |||||||| ||||| || |||||||| ||||||||||| || |  ||| |||||||||| ||||||| ||| || ||||||    
T  15805167 acaagaactccaaagctaaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccactg 15805247  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 15813007 - 15813087
Alignment:
Q  113 cacaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 193  Q
    ||||||||| ||||| ||||||||||| ||||||||||| || |  ||| ||||||| || ||||||| ||| || |||||    
T  15813007 cacaagaactccaaagctgaaaacatcggatttcactgaaaataacccagccatagcgtattctggagccatgtatccact 15813087  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 36311183 - 36311227
Alignment:
Q  154 agattccatccatagcatactctggagacatatagccactgcacg 198  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  36311183 agattccttccatagcatactctggagacatgtatccactgcacg 36311227  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 20167903 - 20167980
Alignment:
Q  119 aacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgca 196  Q
    ||||||||| || || ||||| |||||| |||| || | ||| | ||| |||||||| ||||||||||||||||||||    
T  20167903 aacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactgca 20167980  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 20285186 - 20285109
Alignment:
Q  119 aacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgca 196  Q
    |||||||||||| |||| ||| |||||| |||| || | ||| | ||| ||||| || ||||||||||||||||||||    
T  20285186 aacaccaaaactaaaaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgca 20285109  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 20294903 - 20294826
Alignment:
Q  119 aacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgca 196  Q
    ||||||||| || |||||||| |||||| |||| || | ||| | ||| ||||| || ||||||||||||||||||||    
T  20294903 aacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgca 20294826  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 482820 - 482884
Alignment:
Q  129 ctgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccact 193  Q
    ||||| |||||||||||||| ||||| | ||| ||||| ||||| ||||||| |||||| |||||    
T  482820 ctgaagacatcagatttcacggagaatagtccttccattgcatattctggagccatatatccact 482884  T

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