View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20613_low_4 (Length: 391)
Name: NF20613_low_4
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20613_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 42743708 - 42744070
Alignment:
| Q |
18 |
catatgcaaccttcttcttgcctccaaatggaattgattttccatagaatctatgctgcatttcaatttctaatgcataagataaacatatataattcaa |
117 |
Q |
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| T |
42743708 |
catatgcaaccttcttcttgcctccaaatggaattgattttccatagaatctatgctgcatttcaatttctaatgcataagataaacatatataattcaa |
42743807 |
T |
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| Q |
118 |
atttaatttcaaatcattaaatacatatttgagttgatggtgagtttaacgaaatcaactgcgattttgttgtcaatttcaccgttaatccagacatgta |
217 |
Q |
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| T |
42743808 |
atttaatttcaaatcattaaatacatatttgagttgatggtgagtttaacgaaatcaactgcgattttgttgtcaatttcaacgttaatccagacatgta |
42743907 |
T |
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| Q |
218 |
ctaaaatgttttctaggatatgagacaaaaagacaatgcagaagaggtagagaatccaagacaataaagtttacctcaataaaaaccaaaagggcattga |
317 |
Q |
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| T |
42743908 |
ctaaaatgttgtctaggatatgagacaaaaagacaatgcagaagaggtagagaatccaagacaataaagtttacctcaataaaaaccaaaagggcattga |
42744007 |
T |
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| Q |
318 |
aataaggtgcttgctcaaacataaagccagtgttctgtgtaaaccactctatgttcccttcat |
380 |
Q |
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| T |
42744008 |
aataaggtgcttgctcaaacataaagccagtgttttgtgtaaaccactctatgttcccttcat |
42744070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 380
Target Start/End: Original strand, 42748704 - 42748794
Alignment:
| Q |
290 |
acctcaataaaaaccaaaagggcattgaaataaggtgcttgctcaaacataaagccagtgttctgtgtaaaccactctatgttcccttcat |
380 |
Q |
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| T |
42748704 |
acctcaataaaaaccaaaatggcattgaaatagggtgctatttcgaacataaagccagtgttttgtgcgaaccattgtatgtccccttcat |
42748794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 42748205 - 42748244
Alignment:
| Q |
38 |
cctccaaatggaattgattttccatagaatctatgctgca |
77 |
Q |
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| T |
42748205 |
cctccaaatggtattgattttccatagtatctatgctgca |
42748244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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