View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20613_low_8 (Length: 314)
Name: NF20613_low_8
Description: NF20613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20613_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 42550825 - 42551109
Alignment:
| Q |
18 |
ctaaacgacgttggtttataatctcgttcccgcataagtagttcccggaaagatctcttacacctcaatacaccttcacttccctcttccttcactgctt |
117 |
Q |
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| T |
42550825 |
ctaaacgacgttggtttataatctcgttcctgcataagtagttcccggaaagatctcttacacctcaatacaccttcacttccctcttccttcactgctt |
42550924 |
T |
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| Q |
118 |
ttctccagaatctccgacttaacagcttccttgagaagctcctagaaagaacaccagtggaagctttctttgttttagcactcttttgtgaggacaatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42550925 |
ttctccagaatctccgacttaacagcttccttgagaagctcctagaaagaacaccagtggaagttttctttgttttagcactcttttgtgaggacaatga |
42551024 |
T |
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| Q |
218 |
ctttatggcagttattactgcttcagaagctctctggagagcccttacgcgtcgtcgagggagtgaagtaccgttgctcttcttg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
42551025 |
ctttatggcagttattactgcttcagaagctctctggagagcccttacgcgtcgacgagggagtgaagtaccgttgttcttcttg |
42551109 |
T |
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