View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_high_1 (Length: 843)
Name: NF20614_high_1
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 1e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 599 - 827
Target Start/End: Complemental strand, 1744301 - 1744075
Alignment:
| Q |
599 |
agaaatcatgtgttgattattcatataaatgactaaaaaatggataaggtttgggctccatgtaagaaaaacacatttaaattatgattgttcatataaa |
698 |
Q |
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| T |
1744301 |
agaaatcatgtgttgcacattcacagaaatgactaaaatatggataaggtttgggctccatgtaagaaaaacacatttaaatcatgattgttcatataaa |
1744202 |
T |
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| Q |
699 |
aatattgggcatgtggggttgaggattatttcatggcaccacaccacattgcaaaaagtctcaaaagtgaatattacagatcaccttaacatatgattga |
798 |
Q |
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| T |
1744201 |
aaaattgggcatgtggggttatggagtatttcagggcaccacaccacaatgcaaaaagtctcaaaagtgaataatacagatcaccttaatatatgatt-- |
1744104 |
T |
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| Q |
799 |
gatgatgcctacctaacaagcaaaagact |
827 |
Q |
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| T |
1744103 |
gatgatgcctacctaacaagcaaaagact |
1744075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 141 - 379
Target Start/End: Complemental strand, 1744724 - 1744486
Alignment:
| Q |
141 |
ctatattatcgcaaactagattcagttatcaatctaactaactgtctaaccaattaact-caagttagttacactaccagtacattacttgttatgcaag |
239 |
Q |
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| T |
1744724 |
ctatatgattgcaaactagatttagttgtcattctaacaaactgtctaaccaattcactgcaagttagttacactactagtacattacttgttatgcaag |
1744625 |
T |
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| Q |
240 |
taaactattttacgttctcattttcactattaacactaattcctaaatctgaagtcgaatatattaacttggtcgtgcacataatattaattatcgggta |
339 |
Q |
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| T |
1744624 |
taaactattttaccttctaattttcactattaacactaatacctaaatgtgaagtggaatat-ttaacttagtggtgcacataagattagttatcgcgta |
1744526 |
T |
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| Q |
340 |
taattggaagaaacactacattgaaaattaaacgtgacac |
379 |
Q |
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| T |
1744525 |
taattggaagaaacaccacattgaaaattaaacgtgacac |
1744486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 656 - 824
Target Start/End: Complemental strand, 1749400 - 1749231
Alignment:
| Q |
656 |
ccatgtaagaaaaacacatttaaattatgattgttcatataaaaatattgggcatgtggggttgaggattatttcatggcaccacaccacattgcaaaaa |
755 |
Q |
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| T |
1749400 |
ccatgtaagaaaaacacatttaaattatgattgttcatataaaaaaattgggaatgtggatttatggagtatttcatggaaccacagcacaatgcaaaaa |
1749301 |
T |
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| Q |
756 |
---gtctcaaaagtgaatattacagatcaccttaacatatgattgagatgatgcctacctaacaagcaaaag |
824 |
Q |
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| T |
1749300 |
aatgcctcaaaagtgaatattacagatcaccttaacatatgact--gatgatgcctacctaacaagcaaaag |
1749231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 1744379 - 1744322
Alignment:
| Q |
454 |
tcattaaaatgaataaaaatacttccaaatgtgtttttccttcttgaaattactttgt |
511 |
Q |
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| T |
1744379 |
tcattaaaatgaataaaaatacttccaaatgtgtttttccttcttgaaattactttgt |
1744322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 1744464 - 1744415
Alignment:
| Q |
398 |
gtttagagtcaagtaaccctcattttgagataaaatattatttttaaata |
447 |
Q |
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| T |
1744464 |
gtttagaatcaagtaaccctcgttttgagattaaatattatttttaaata |
1744415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 577
Target Start/End: Complemental strand, 1749500 - 1749465
Alignment:
| Q |
542 |
atggaaagcatgaccagttttaaaagttgttgatga |
577 |
Q |
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| T |
1749500 |
atggaaagcatgaccagttttacaagttgttgatga |
1749465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1744849 - 1744804
Alignment:
| Q |
18 |
ctgtggatgaatgaaaaa-gcttgcaaacatgcaaagaaaacaaag |
62 |
Q |
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| T |
1744849 |
ctgtggatgaatgaaaaaagcttgcaaacatgcatagaaaataaag |
1744804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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