View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_high_11 (Length: 255)
Name: NF20614_high_11
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 1716717 - 1716485
Alignment:
| Q |
17 |
aaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatcttccacccatttggcttg |
116 |
Q |
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| T |
1716717 |
aaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatcttacgctcgtttgacttg |
1716618 |
T |
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| Q |
117 |
attgccatgctcatcaaaatgactgtatttcaatacattagcaaatacaaataaattcaccttatttcccacatctagccgaaactc-agactgtttaat |
215 |
Q |
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| | | ||||||||||||| |||| |||||||||||||||||| ||| |||||| |||||||||||| ||| || || ||||||| |||||||| | |
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| T |
1716617 |
agttctatgctcatcaaaacgactctatttcaatacattagcagataaaaataagttcaccttattttccatatgaagttgaaactcttaactgtttact |
1716518 |
T |
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| Q |
216 |
ttaggttatttcaaaacttaatagttcttctcac |
249 |
Q |
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||||||||||||||||||| |||||||| ||||| |
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| T |
1716517 |
ttaggttatttcaaaactt-atagttctactcac |
1716485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 1738117 - 1738009
Alignment:
| Q |
17 |
aaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtag------tgtatcattgacatcttccacccattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
1738117 |
aaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggcagtatgtagatctagtagtgtaagtgtaccattgacatcttccacccattt |
1738018 |
T |
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| Q |
111 |
ggcttgatt |
119 |
Q |
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| T |
1738017 |
ggcttgatt |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 1738009 - 1737981
Alignment:
| Q |
215 |
tttaggttatttcaaaacttaatagttct |
243 |
Q |
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| T |
1738009 |
tttaggttatttcaaaacttaatagttct |
1737981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 33577697 - 33577656
Alignment:
| Q |
146 |
tcaatacattagcaaatacaaataaattcaccttatttccca |
187 |
Q |
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| T |
33577697 |
tcaatacattagcaaataaaactaaaatcaccttatttccca |
33577656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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