View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20614_high_14 (Length: 241)
Name: NF20614_high_14
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_14 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0010 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 139604 - 139828
Alignment:
| Q |
1 |
atattttgttttgaaacaacttgcagccaaagtttttattcaaaagagttcttttcaaaaaacataagacatatgacttagagtgaaagagtgatttaca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139604 |
atattttgttttgaaataacttgcagccaaagtttttattcaaaagagttcttttcaaaaaacataagacatatgacttagagtgaaagagtgatttaca |
139703 |
T |
|
| Q |
101 |
aaaactatactaattcaaaagacatcaatcaaaatcatcttaaacaacttatcagcctagggagtaactacaaaaggtaggagtcatcatccccaagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139704 |
aaaactatactaattcaaaagacatcaatcaaaattatctaaaacaacttatcagcctagggagtaactacaaaaggtaggagtcatcatccccaagtga |
139803 |
T |
|
| Q |
201 |
agattaaggcattgacccatataaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
139804 |
agattaaggcattgacccatataaa |
139828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 19707778 - 19707840
Alignment:
| Q |
29 |
aaagtttttattcaaaagagttcttttcaaaa--aacataagacatatgacttagagtgaaag |
89 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| | ||||||||||||||| |||||| |||| |
|
|
| T |
19707778 |
aaagtttttatgcaaaagagatcttttcaaaaacatcataagacatatgacatagagttaaag |
19707840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 31641 - 31569
Alignment:
| Q |
101 |
aaaactatactaattcaaaagacatcaatcaaaatcatcttaaacaacttatcagcctagggagtaactacaa |
173 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |||| ||||| | ||| ||||| |||||||| |
|
|
| T |
31641 |
aaaactaagctaattcaaaagacatcaatcaaaactatctagaacagcttataaaccttgggagaaactacaa |
31569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University