View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_high_17 (Length: 212)
Name: NF20614_high_17
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 28560503 - 28560671
Alignment:
| Q |
18 |
gtaataagtgtggtatgcttctaatgcatacttgtggaaacacatcgtgtgcnnnnnnnnnnctcttcttcttttatctttaataactttcaacacatca |
117 |
Q |
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| T |
28560503 |
gtaataagtgtggtatgcttcaaatgcatacttgtggaaacacatcgtgtgcttttttttt--tcttcttcttgtatc---aataactttcaacacatca |
28560597 |
T |
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| Q |
118 |
atataagatgtgcgtgtgtgttagtttcttttcttttcttataatgtgatgttataaatatgtgaccctatctg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28560598 |
atataagatgtgcgtgtgtgttagtttcttttcttttcttataatgtgatgttataaatatgtgaccctatctg |
28560671 |
T |
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