View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_high_2 (Length: 739)
Name: NF20614_high_2
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 195 - 659
Target Start/End: Original strand, 2535023 - 2535478
Alignment:
| Q |
195 |
atcacaaaggaggcgtataactcgatcagtcccttcaaactatactaaccaaatataaagaacgtgattcccacgtcctcgttccagagtctcatctatg |
294 |
Q |
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| T |
2535023 |
atcacaaaagagacgtatgactcaatcggttccttcaaactata-tgaccaaatataaagaacatgaa-ctcacgtcctcgttccagagtctcatc---- |
2535116 |
T |
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| Q |
295 |
tgaaattgaaggagggtacaataaccaaccatctgctttattttgagctttgtcgcatcaaccaaataattgtaaaggaag-gcaagatccgcaacaccc |
393 |
Q |
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| T |
2535117 |
----attgaaggagggtacaataaccaaccatctgctttattttgaactttgtcgcatcaaccaaataattgtaaaggaagtgcaagatccgcaacaccc |
2535212 |
T |
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| Q |
394 |
tagaaccactagttcactttagggatgtcttgaaagtagtgtaggtacatgaaatctacatagtatgaactcctatcatgtgacgatcttaaacatgctc |
493 |
Q |
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| T |
2535213 |
tagaaccactagttcactttaaagatgtcttgaaagtagtgtaggtacatgaaatctacatagtatgaactcctatcatgtgacgatcttaaacatgctc |
2535312 |
T |
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| Q |
494 |
taatccttttctcaatctcgtactgatttgccttgattagataatcatggtaaatttcttgaagccatgagaatgttatatgagcctctagcatgtggct |
593 |
Q |
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| T |
2535313 |
taatccttttctcaatctcatactgatttgccttgattagataatcatggtaaatttcttgaagccatgagaatgttatatgagcctctagcatgtggct |
2535412 |
T |
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| Q |
594 |
ctactcccaagaactcaattaaccatatagtcgcatcgtctttcgccatcgggggatatggttaag |
659 |
Q |
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| T |
2535413 |
ctactcccaagaactcaattaaccatatagtcgcatcgtctttcgccattgggggatatggttaag |
2535478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 656 - 726
Target Start/End: Original strand, 2535627 - 2535697
Alignment:
| Q |
656 |
taagtagtttaccgattaaactgaaagttgttggtctttatttgttacctctatgttaatgttgtgcatat |
726 |
Q |
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| T |
2535627 |
taagtagtttaccgattaaactgaaagttgttggtctttatttgttacctctatgttaatgttgtgcatat |
2535697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2534821 - 2534885
Alignment:
| Q |
1 |
aacacacacttaatctacttaggatatatttcattcaaattagagaagtaaagtgaaattacgaa |
65 |
Q |
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| T |
2534821 |
aacacacacttaatctacttaggatatatttcatttaaattagagaagtaaagtgaaattacgaa |
2534885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 2534958 - 2534998
Alignment:
| Q |
138 |
aaaaggttaagactcttttgaaaataatcaacaaatatcat |
178 |
Q |
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| T |
2534958 |
aaaaggttaagactcttttgaaaataatcaacaaatatcat |
2534998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 21304118 - 21304073
Alignment:
| Q |
212 |
taactcgatcagtcccttcaaactatactaaccaaatataaagaac |
257 |
Q |
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| T |
21304118 |
taactcgatcggtcccttcaaactatgctcaccaaatatagagaac |
21304073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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