View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20614_high_5 (Length: 404)

Name: NF20614_high_5
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20614_high_5
NF20614_high_5
[»] chr1 (5 HSPs)
chr1 (1-394)||(21711905-21712297)
chr1 (1-394)||(21707363-21707754)
chr1 (1-381)||(11945639-11946022)
chr1 (356-392)||(27653104-27653141)
chr1 (356-391)||(20346007-20346043)
[»] scaffold1128 (1 HSPs)
scaffold1128 (1-79)||(1-79)
[»] scaffold1439 (1 HSPs)
scaffold1439 (356-394)||(383-422)
[»] scaffold0290 (1 HSPs)
scaffold0290 (356-394)||(359-398)
[»] scaffold0125 (1 HSPs)
scaffold0125 (356-394)||(1756-1795)
[»] scaffold0123 (1 HSPs)
scaffold0123 (356-394)||(737-776)
[»] scaffold0107 (1 HSPs)
scaffold0107 (356-394)||(9966-10005)
[»] chr8 (3 HSPs)
chr8 (356-394)||(17460934-17460973)
chr8 (356-394)||(19808244-19808283)
chr8 (356-394)||(22237901-22237940)
[»] chr7 (1 HSPs)
chr7 (356-394)||(46580557-46580596)
[»] chr6 (2 HSPs)
chr6 (356-394)||(18696687-18696726)
chr6 (356-394)||(18706505-18706544)
[»] chr5 (1 HSPs)
chr5 (356-394)||(30138810-30138849)
[»] chr4 (2 HSPs)
chr4 (356-394)||(10056838-10056877)
chr4 (359-394)||(630553-630589)
[»] chr3 (1 HSPs)
chr3 (356-394)||(14966368-14966407)
[»] chr2 (1 HSPs)
chr2 (356-392)||(18358616-18358653)
[»] scaffold0260 (1 HSPs)
scaffold0260 (356-391)||(8330-8366)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 21712297 - 21711905
Alignment:
Q  1 taatatatatagtactaatagtgatagcttttcagctatatttcgatctctctctattttaccttgtccttaattgatcctgtatatttatttcaaacag 100  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21712297 taatatatatactactaatagtgatagcttttcagctatattccgatctctctctattttaccttgtccttaattgatcctgtatatttatttcaaacag 21712198  T
Q  101 ttgtcaatggaactcttaaagtaatatacatctctataactatctaaatgaaaattgagctacaagtgtatataatttctttttgtaaatgaatgaaact 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21712197 ttatcaatggaactcttaaagtaatatacatctctataactatctaaatgaaaattgagctacaagtgtatataatttctttttgtaaatgaatgaaact 21712098  T
Q  201 cctatgtttagatttttacttgagaactgttggaaatcgtgatactaatttgagggaacaattatatgcatacnnnnnnnnattgatgaagtatttgttt 300  Q
    | ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  21712097 cgtatgtttagatttttacttgaaaactgttggaaactgtgatactaatttgagggaacaattatatgcatac-tttttttattgatgaagtatttgttt 21711999  T
Q  301 tgatgtcaatgaataacttattgctatatttatatgcacaccgtatgtataaatttaggaatggaggttgaatataatattacgatgatctgtg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  21711998 tgatgtcaatgaataacttattgctatatttatatgcacaccgtatgtataaatttaggaacgaaggttgaatataatatgatgatgatctgtg 21711905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 21707754 - 21707363
Alignment:
Q  1 taatatatatagtactaatagtgatagcttttcagctatatttcgatctctctctattttaccttgtccttaattgatcctgtatatttatttcaaacag 100  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21707754 taatatatatagtactgatagtgatagcttttcagctatattccgatctctctctattttaccttgtccttaattgatcctgtatatttatttcaaacag 21707655  T
Q  101 ttgtcaatggaactcttaaagtaatatacatctctataactatctaaatgaaaattgagctacaagtgtatataatttctttttgtaaatgaatgaaact 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21707654 ttatcaatggaactcttaaagtaatatacatctctataactatctaaatgaaaattgagctacaagtgtatataa-ttctttttgtaaatgaatgaaact 21707556  T
Q  201 cctatgtttagatttttacttgagaactgttggaaatcgtgatactaatttgagggaacaattatatgcatacnnnnnnnnattgatgaagtatttgttt 300  Q
    | ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  21707555 cgtatgtttagatttttacttgaaaactgttggaaactgtgatactaatttgagggaacaattatatgcatac-tttttttattgatgaagtatttgttt 21707457  T
Q  301 tgatgtcaatgaataacttattgctatatttatatgcacaccgtatgtataaatttaggaatggaggttgaatataatattacgatgatctgtg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  21707456 tgatgtcaatgaataacttattgctatatttatatgcacaccgtatgtataaatttaggaacgaaggttgaatataatatgatgatgatctgtg 21707363  T

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Target: chr1; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 11946022 - 11945639
Alignment:
Q  1 taatatatatagtactaatagtgatagcttttcagctatatttcgatctctctctattttaccttgtccttaattgatcctgtatatttattt----caa 96  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||    |||    
T  11946022 taatatatatagtactgatagtgatagcttttcagctatattccgatctctctatattttaccttgtccttaattgatcctctatatttatttattccaa 11945923  T
Q  97 acagttgtcaatggaactcttaaagtaatatacatctctataactatctaaatgaaaattgagctacaagtgtatataatttctttttgtaaatgaatga 196  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11945922 acagttatcaatggaactcttaaagtaatatacatctctataactatctaaatgaaaattgagctacaagtgtatataatt-ctttttgtaaatgaatga 11945824  T
Q  197 aactcctatgtttagatttttacttgagaactgttggaaatcgtgatactaatttgagggaacaattatatgcatacnnnnnnnnattgatgaagtattt 296  Q
    ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  11945823 aacttgtatgtttagatttttacttgagaactgttggaaaccgtgatactaatttgagggaacaattatatgcatacttttttttattgatgaagtattt 11945724  T
Q  297 gttttgatgtcaatgaataacttattgctatatttatatgcacaccgtatgtataaatttaggaatggaggttgaatataatatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11945723 gttttgatgtcaatgaataacttattgctatatttatatgcacaccgtatgtataaatttagaaatggaggttgaatataatatt 11945639  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 27653104 - 27653141
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctg 392  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27653104 taggaatggaggttgaatataatattactgatgatctg 27653141  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 20346043 - 20346007
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatct 391  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20346043 taggaatggaggttgaatataatattactgatgatct 20346007  T

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Target: scaffold1128 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 79 - 1
Alignment:
Q  1 taatatatatagtactaatagtgatagcttttcagctatatttcgatctctctctattttaccttgtccttaattgatc 79  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  79 taatatatatagtactgatagtgatagcttttcagctatattccgatctctctatattttaccttgtccttaattgatc 1  T

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Target: scaffold1439 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 422 - 383
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  422 taggaatggaggttgaatataatattactgatgatctgtg 383  T

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Target: scaffold0290 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 398 - 359
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  398 taggaatggaggttgaatataatattactgatgatctgtg 359  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 1756 - 1795
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  1756 taggaatggaggttgaatataatattactgatgatctgtg 1795  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 776 - 737
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  776 taggaatggaggttgaatataatattactgatgatctgtg 737  T

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Target: scaffold0107 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 9966 - 10005
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  9966 taggaatggaggttgaatataatattactgatgatctgtg 10005  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 17460934 - 17460973
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  17460934 taggaatggaggttgaatataatattactgatgatctgtg 17460973  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 19808244 - 19808283
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  19808244 taggaatggaggttgaatataatattactgatgatctgtg 19808283  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 22237901 - 22237940
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  22237901 taggaatggaggttgaatataatattactgatgatctgtg 22237940  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 46580557 - 46580596
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  46580557 taggaatggaggttgaatataatattactgatgatctgtg 46580596  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 18696726 - 18696687
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  18696726 taggaatggaggttgaatataatattactgatgatctgtg 18696687  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 18706544 - 18706505
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  18706544 taggaatggaggttgaatataatattactgatgatctgtg 18706505  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 30138810 - 30138849
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30138810 taggaatggaggttgaatataatattactgatgatctgtg 30138849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 10056877 - 10056838
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  10056877 taggaatggaggttgaatataatattactgatgatctgtg 10056838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 630553 - 630589
Alignment:
Q  359 gaatggaggttgaatataatattac-gatgatctgtg 394  Q
    ||||||||||||||||||||||||| |||||||||||    
T  630553 gaatggaggttgaatataatattactgatgatctgtg 630589  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 14966407 - 14966368
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatctgtg 394  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  14966407 taggaatggaggttgaatataatattactgatgatctgtg 14966368  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 18358616 - 18358653
Alignment:
Q  356 taggaatggaggttgaatataatatta-cgatgatctg 392  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  18358616 taggaatggaggttgaatataatattaccgatgatctg 18358653  T

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Target: scaffold0260 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 8366 - 8330
Alignment:
Q  356 taggaatggaggttgaatataatattac-gatgatct 391  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8366 taggaatggaggttgaatataatattactgatgatct 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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