View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_high_6 (Length: 339)
Name: NF20614_high_6
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 5975341 - 5975618
Alignment:
| Q |
19 |
aagatgtccttttgaaatttg-aagactaaaaacaaattgagtggttggtgagtagtaataatctgtcaaaatcatgggaggccagcgctgctctttttg |
117 |
Q |
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| T |
5975341 |
aagatgtccttttgaaatttggaagactaaaaacaaattgagtggttggtgagtagtaataatctgtcaaaatcatgggaggccagcgctgctctttttg |
5975440 |
T |
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| Q |
118 |
ttatgcatagaaccacttaactttagaacnnnnnnnnnnnnnnnnnnnnnttagtcatgttaattaaaagcttgtgatgtagtataagtataaaacacga |
217 |
Q |
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| T |
5975441 |
ttatgcatagaaccacttaactttagaacaaagaaagaaagaaagaaaaattagtcatgttaattaaaagcttgtgatgtagtataagtataaaacacga |
5975540 |
T |
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| Q |
218 |
catgttcatgagtggtctcatcacnnnnnnnnnagggaggtctcaaaacttgattaatacattccaccgttaatgcat |
295 |
Q |
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| T |
5975541 |
catgttcatgagtggtctcatcactttttttttagggaggtctcaaaacttgattactacattccaccgttaatgcat |
5975618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 5975650 - 5975622
Alignment:
| Q |
289 |
aatgcatgaaatccaaatttgtttagtac |
317 |
Q |
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| T |
5975650 |
aatgcatgaaatccaaatttgtttagtac |
5975622 |
T |
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