View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_high_9 (Length: 288)
Name: NF20614_high_9
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 43514319 - 43514042
Alignment:
| Q |
1 |
atggaatcataccccaaaaatacaatcaagttcctctttagctacggcggaaaaatcctcccccgcctcaccgacggcaagctccgctacaccggtggcc |
100 |
Q |
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| T |
43514319 |
atggaatcataccccaaaaatacaatcaagttcctctttagctacggcggaaaaatcctcccccgcctcaccgacggcaagctccgctacaccggtggcc |
43514220 |
T |
|
| Q |
101 |
acacccgagtcctcgctctccctccacccatttctttctcaggtttgtttatcatcccaccaaactttcaatttaagcactcttaattcatcaatcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43514219 |
acacccgagtcctcgctctccctccacccatttctttctcaggtttgtttctcatctcaccaaactttcaatttaagcactcttaattcatcaatcaatg |
43514120 |
T |
|
| Q |
201 |
acacgttcatcagccacaacagtgacatattgatctatgtagaaatgatattattgaatttaaccacgtatgtctgtg |
278 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
43514119 |
acacgttcatcagacacaacagtgacatattgatctatgtagaaatgatattattgaatttaaccatgtatgtttgtg |
43514042 |
T |
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