View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20614_low_12 (Length: 251)
Name: NF20614_low_12
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 46658450 - 46658669
Alignment:
| Q |
11 |
taatacttcaacccacgcccacatctttaatttaatttattgacgtgaagacatcaaatatatggttgccaaaaactatggaaaaagtacttttgggcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46658450 |
taatacttcaacccacgcccacatctttaatttaatttattaacgtgaagacatcaaatatatggttgccaaaaactatggaaaaagtacttttgggcaa |
46658549 |
T |
|
| Q |
111 |
tagaacagcgcattaggaagnnnnnnncatcagcaacataattaacgcattgattgtgagcgtgtaaaatggagtacattgattctgggactgggtggca |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
46658550 |
tagaacagcgcattaggaagtttttttcatcagcaacataattaacgcattgattgtgagcgtgtaaaatggagtacattgatt------cagggtggca |
46658643 |
T |
|
| Q |
211 |
tttagcctgaaccaatgaaagtattg |
236 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46658644 |
tttagcctgaaccaatgaaagtattg |
46658669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 34051295 - 34051327
Alignment:
| Q |
204 |
ggtggcatttagcctgaaccaatgaaagtattg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34051295 |
ggtggcatttagcctgaaccaatgaaagtattg |
34051327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 8204319 - 8204351
Alignment:
| Q |
204 |
ggtggcatttagcctgaaccaatgaaagtattg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8204319 |
ggtggcatttagcctgaaccaatgaaagtattg |
8204351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 30319717 - 30319749
Alignment:
| Q |
204 |
ggtggcatttagcctgaaccaatgaaagtattg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30319717 |
ggtggcatttagcctgaaccaatgaaagtattg |
30319749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 45245199 - 45245231
Alignment:
| Q |
204 |
ggtggcatttagcctgaaccaatgaaagtattg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45245199 |
ggtggcatttagcctgaaccaatgaaagtattg |
45245231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University