View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_low_3 (Length: 680)
Name: NF20614_low_3
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 10494966 - 10494472
Alignment:
| Q |
16 |
taaaccaatgaaatctacattgtttgtggaggcataagaaaatgctttctctcannnnnnncgttgttatgttagttgttggtgacatggaccgagatct |
115 |
Q |
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| T |
10494966 |
taaaccgatgaaatctacattgtttgttgcggcataagaaaatgctttctctcctttttttcgtt---atgttagttgttggtgacatggaccgagatcc |
10494870 |
T |
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| Q |
116 |
taagaaatttgtaggtattttcttaccccgtatatctagataacagtggtggttaatttctagagtatgagtatattcattttctttttgtgaagttttg |
215 |
Q |
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| T |
10494869 |
taagaaattcgtaggtattttcttacctcgtatatctagataacggtggtggttaatttccagagtatcagtatattcattttctttttgtgaagttttg |
10494770 |
T |
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| Q |
216 |
cttcaacttcaagttgtttgttgtacatgttcagtttgatcaatgattggtgttgatcattcaaaatcatgctttggtctctcgttgtcttgtaacttgt |
315 |
Q |
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| T |
10494769 |
cttcaactccaagttgtttgttgtgcatgttcagtttgatcaatggttggtgttgagcattcaaaatcatgctttggtctctcgttgtcttgtaacttgt |
10494670 |
T |
|
| Q |
316 |
ttggttatagtggagggcttgacggttttgtttcatgttcggggtttattttgagtattttagactattattctatctttgtactgtattttgggtgttg |
415 |
Q |
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| T |
10494669 |
ttggttatagtggagggcttgacggttttgtttcatgttcggggtttattttgagtattttagactattattctatc-ttgtactgtattttgggtgttg |
10494571 |
T |
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| Q |
416 |
tttgtttagtttttggattgtatcaagcatgcttatgtcgnnnnnnncgtnnnnnnnnttatcattttttctttcaactttatctcagttatctcactt |
514 |
Q |
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| T |
10494570 |
tttgtttagtttttggattgtatcaagcatgcttatgtcgtttttttcctaaaaaaatttatcattttttctttcaactttatctcagttatctcactt |
10494472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 616
Target Start/End: Complemental strand, 10494401 - 10494371
Alignment:
| Q |
586 |
aaacactacaaattccttcggttagtataac |
616 |
Q |
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| T |
10494401 |
aaacactacaaattccttcggttagtataac |
10494371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 680
Target Start/End: Complemental strand, 10494339 - 10494311
Alignment:
| Q |
652 |
atgcttataacatttcattgttaataata |
680 |
Q |
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| T |
10494339 |
atgcttataacatttcattgttaataata |
10494311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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