View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20614_low_4 (Length: 416)
Name: NF20614_low_4
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20614_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 31911061 - 31911303
Alignment:
| Q |
10 |
aatatgacgtagttaaccagacaatatccgatttggtgatatctggctatctgtttcagatattgtcatctttcaattagaatctagttaactaattaat |
109 |
Q |
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| T |
31911061 |
aatatgacgtagttaaccagacaatatccgatttggtaatatctggctatctgtttcagatattgtcatctttcaattagaatctagttaactaattaat |
31911160 |
T |
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| Q |
110 |
atatatatactacatcaaaaacaataaacttaacaaatataggccacactttttattcgcattattgtggtccttcacgatattttgcaatgtaagcatc |
209 |
Q |
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| T |
31911161 |
ataca----ctacatcaaaaacaataaacttaacaaatataggccacactttttattcgcattattgtggtccttcacgatattttgcaatgtaagcatc |
31911256 |
T |
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| Q |
210 |
aagaacactaaatcataaccctgatgattattataagtaaaaatgta |
256 |
Q |
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| T |
31911257 |
aataacactaaatcataaccctgatgaatattataagtaaaattgta |
31911303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 31911383 - 31911465
Alignment:
| Q |
322 |
taaattaatttttgcttataaaaatgactagaagatat----atatatttggtgttaagttaaaatattaatgaggtaaaagt |
400 |
Q |
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| T |
31911383 |
taaattaatttttgcttataaaaatgactaggagatatatatatatatttggtgttaagttaaaatattaatgaggtaaaagt |
31911465 |
T |
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