View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20614_low_7 (Length: 325)

Name: NF20614_low_7
Description: NF20614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20614_low_7
NF20614_low_7
[»] chr1 (24 HSPs)
chr1 (147-306)||(8044126-8044286)
chr1 (1-151)||(8043881-8044022)
chr1 (12-110)||(47187817-47187915)
chr1 (1-110)||(2864144-2864252)
chr1 (12-114)||(39156273-39156379)
chr1 (1-80)||(26811258-26811337)
chr1 (33-115)||(6883119-6883201)
chr1 (42-110)||(31889204-31889273)
chr1 (7-111)||(32562349-32562452)
chr1 (12-104)||(40460725-40460817)
chr1 (12-110)||(30822772-30822870)
chr1 (12-82)||(18432977-18433047)
chr1 (1-110)||(39150583-39150692)
chr1 (1-114)||(42791134-42791247)
chr1 (1-69)||(8365504-8365572)
chr1 (11-79)||(17552844-17552912)
chr1 (12-139)||(3982277-3982403)
chr1 (1-52)||(8372996-8373047)
chr1 (42-109)||(43397012-43397079)
chr1 (12-82)||(38491233-38491303)
chr1 (12-110)||(38748717-38748815)
chr1 (7-64)||(7212780-7212837)
chr1 (1-110)||(34409735-34409843)
chr1 (12-129)||(44829284-44829400)
[»] chr4 (26 HSPs)
chr4 (12-128)||(50341845-50341961)
chr4 (1-120)||(7852530-7852649)
chr4 (12-119)||(35777686-35777793)
chr4 (1-110)||(41462050-41462159)
chr4 (1-121)||(24175384-24175503)
chr4 (1-109)||(53014203-53014311)
chr4 (21-112)||(31429298-31429389)
chr4 (12-110)||(8297883-8297981)
chr4 (1-115)||(49400613-49400727)
chr4 (1-119)||(45900136-45900254)
chr4 (1-110)||(50426990-50427099)
chr4 (12-111)||(25115259-25115357)
chr4 (11-110)||(47995733-47995832)
chr4 (11-110)||(37440837-37440936)
chr4 (12-110)||(24229642-24229740)
chr4 (71-139)||(23605634-23605702)
chr4 (1-101)||(27953046-27953145)
chr4 (10-69)||(23605964-23606023)
chr4 (76-110)||(13585257-13585291)
chr4 (1-59)||(23689883-23689941)
chr4 (33-114)||(37060581-37060663)
chr4 (1-110)||(48337557-48337667)
chr4 (57-98)||(14031347-14031388)
chr4 (12-69)||(20394650-20394707)
chr4 (12-140)||(34391673-34391801)
chr4 (11-98)||(49084408-49084496)
[»] chr5 (20 HSPs)
chr5 (12-139)||(18229569-18229696)
chr5 (12-120)||(30501126-30501234)
chr5 (12-120)||(30541469-30541577)
chr5 (12-114)||(16667284-16667386)
chr5 (12-110)||(34899132-34899230)
chr5 (1-110)||(3140815-3140924)
chr5 (12-110)||(9276576-9276674)
chr5 (21-114)||(7719225-7719318)
chr5 (14-139)||(39558734-39558859)
chr5 (9-140)||(5815037-5815168)
chr5 (21-139)||(8208200-8208318)
chr5 (12-110)||(30104816-30104914)
chr5 (1-110)||(112482-112591)
chr5 (1-118)||(17692263-17692380)
chr5 (1-74)||(40530467-40530540)
chr5 (57-120)||(7968447-7968510)
chr5 (12-110)||(15720079-15720177)
chr5 (42-110)||(2918592-2918661)
chr5 (13-101)||(18963825-18963914)
chr5 (12-93)||(41583555-41583635)
[»] chr8 (19 HSPs)
chr8 (11-129)||(4384113-4384230)
chr8 (12-110)||(2258087-2258185)
chr8 (11-148)||(27801184-27801321)
chr8 (1-111)||(12829866-12829976)
chr8 (12-110)||(36355953-36356046)
chr8 (12-110)||(42636362-42636460)
chr8 (13-110)||(1135174-1135271)
chr8 (1-110)||(1369855-1369964)
chr8 (1-110)||(884417-884526)
chr8 (13-111)||(24695760-24695857)
chr8 (2-103)||(12954730-12954831)
chr8 (12-112)||(12684488-12684588)
chr8 (14-64)||(3146050-3146100)
chr8 (1-110)||(33949546-33949655)
chr8 (12-83)||(37813425-37813497)
chr8 (12-110)||(28207636-28207735)
chr8 (12-74)||(9024500-9024562)
chr8 (12-110)||(33013057-33013155)
chr8 (16-101)||(2072381-2072465)
[»] chr2 (16 HSPs)
chr2 (12-110)||(1334880-1334978)
chr2 (1-110)||(19890185-19890294)
chr2 (14-110)||(34904784-34904880)
chr2 (12-114)||(4762361-4762463)
chr2 (1-110)||(37993079-37993188)
chr2 (1-110)||(41933132-41933241)
chr2 (7-88)||(43228843-43228924)
chr2 (11-110)||(19514882-19514981)
chr2 (11-110)||(20064922-20065020)
chr2 (12-110)||(9448950-9449047)
chr2 (1-118)||(5524462-5524579)
chr2 (1-110)||(31452343-31452451)
chr2 (12-140)||(31017274-31017402)
chr2 (10-110)||(33067716-33067816)
chr2 (12-79)||(14295640-14295707)
chr2 (42-110)||(29239245-29239313)
[»] chr7 (21 HSPs)
chr7 (1-139)||(25886171-25886309)
chr7 (1-110)||(43234791-43234900)
chr7 (12-139)||(3692889-3693017)
chr7 (12-120)||(27123286-27123394)
chr7 (17-104)||(42936024-42936109)
chr7 (11-118)||(26239529-26239636)
chr7 (21-120)||(28663125-28663224)
chr7 (16-110)||(28770493-28770587)
chr7 (1-110)||(29711489-29711598)
chr7 (12-120)||(35496559-35496667)
chr7 (13-119)||(21727393-21727499)
chr7 (14-120)||(44537355-44537461)
chr7 (12-104)||(37158358-37158450)
chr7 (12-139)||(2347429-2347555)
chr7 (76-110)||(9718990-9719024)
chr7 (24-110)||(35731311-35731397)
chr7 (12-110)||(39320978-39321076)
chr7 (1-110)||(43224083-43224192)
chr7 (1-57)||(26197539-26197595)
chr7 (13-69)||(35923540-35923596)
chr7 (12-84)||(44592878-44592950)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-110)||(103645-103754)
[»] chr6 (17 HSPs)
chr6 (42-122)||(31855096-31855176)
chr6 (12-110)||(17215679-17215777)
chr6 (12-103)||(24103781-24103872)
chr6 (11-114)||(30739610-30739713)
chr6 (1-101)||(1840984-1841084)
chr6 (12-110)||(1479089-1479186)
chr6 (1-110)||(9762804-9762913)
chr6 (12-111)||(2692426-2692524)
chr6 (12-110)||(7421684-7421782)
chr6 (1-82)||(28874400-28874481)
chr6 (11-110)||(27778765-27778863)
chr6 (18-69)||(34235415-34235466)
chr6 (12-106)||(3766289-3766383)
chr6 (1-139)||(19293420-19293558)
chr6 (42-110)||(2864918-2864987)
chr6 (7-83)||(9301915-9301992)
chr6 (1-82)||(34231979-34232060)
[»] chr3 (12 HSPs)
chr3 (1-115)||(29083890-29084005)
chr3 (1-79)||(49362381-49362459)
chr3 (11-110)||(51351288-51351387)
chr3 (21-110)||(26900019-26900109)
chr3 (20-82)||(26143090-26143152)
chr3 (21-114)||(45988215-45988310)
chr3 (12-114)||(52249338-52249440)
chr3 (30-110)||(47638925-47639005)
chr3 (14-109)||(35177813-35177908)
chr3 (11-112)||(11132556-11132660)
chr3 (11-109)||(40673445-40673543)
chr3 (30-83)||(47040052-47040105)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-139)||(62492-62630)
[»] scaffold0268 (1 HSPs)
scaffold0268 (24-110)||(20245-20330)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-82)||(1066-1147)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-110)||(25079-25189)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 8044126 - 8044286
Alignment:
Q  147 tttatccgatataaactagattatcatacaactaannnnnnnctaccaa-ctgaggctaattatgggtccattatcatatataagtgggacatatgtgag 245  Q
    ||||||| ||||||||| ||||||||||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8044126 tttatccaatataaacttgattatcatacaactattttttttctaccaaactgaggctaattatgggtccattatcatatataagtgggacatatgtgag 8044225  T
Q  246 taagtaatttgtaatggcgctggcattgattgaagaatattaattcagcagctagctagcg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8044226 taagtaatttgtaatggcgctggcattgattgaagaatattaattcagcagctagctagcg 8044286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8043881 - 8044022
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||||||| ||||||||| |||||||| | |||| ||||| |||||||        ||| ||||||||||||||||||||||||||||||    
T  8043881 ttaagcatcctaaatttaataattattcttttaaaaagtcgactgttacagtttctaa--------atacacaatttttcatataaaatttaccatttaa 8043972  T
Q  101 agtgcttaaaaagtaccccgaaaacactctataacatttttcttattttat 151  Q
    |||  |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  8043973 agtatttaaaaagtacctcgaaagcactctttaaca-ttttcttattttat 8044022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 47187915 - 47187817
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||| ||||||||||  ||||||| |||||| |||||||| |||| | ||||||||||  |||| ||||||||| ||||| |||||    
T  47187915 aaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttaccattttaagtgtttaaa 47187817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2864144 - 2864252
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||||||||  | |||||| |||||||| |||||||| |  |||||||||||||| |||||||| |||| |||| |||||||  |||| |||| ||||||    
T  2864144 ttaaacatcccatatttaggaattattc-tttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttaa 2864242  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  2864243 agtgcttaaa 2864252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 39156273 - 39156379
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatata----aaatttaccatttaaagtgctt 107  Q
    ||||||||||||||||| |||||||| |  |||| ||||||||| |||||||| |||| |||||||||  | ||    ||||||||||||||||||| ||    
T  39156273 aaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaatacacaattttttttttattaaaaatttaccatttaaagtgttt 39156372  T
Q  108 aaaaagt 114  Q
    |||||||    
T  39156373 aaaaagt 39156379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26811337 - 26811258
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttc 80  Q
    ||||||||| || ||||||||||||||| ||||||||||| ||||||| |||||| ||| |||  ||||||||| |||||    
T  26811337 ttaaacatcctatatttagtaattattcttttaaaaaattaactattagaatttccaatacatacaatatacaacttttc 26811258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 6883201 - 6883119
Alignment:
Q  33 aaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaagta 115  Q
    |||||||  |||||||||||||| |||||||| | || | || ||||||||||||||||| ||||||||||| ||||| ||||    
T  6883201 aaaaaatcaactattacaatttcaaatgcattcattacataacttttcatataaaatttatcatttaaagtgtttaaagagta 6883119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 31889204 - 31889273
Alignment:
Q  42 actattacaatttctaatgcatttaatatacaa-tttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||| ||||||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||||||    
T  31889204 actattacgatttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaaatgcttaaa 31889273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 32562452 - 32562349
Alignment:
Q  7 atcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgct 106  Q
    |||| ||||||||||||||||  |||||||| |  |||||||||||||  |||||| | |||| ||||||||| ||| |||| |||| |||||||||| |    
T  32562452 atctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgcagtgaatacacaattttttata-aaaacttactatttaaagtgtt 32562354  T
Q  107 taaaa 111  Q
    |||||    
T  32562353 taaaa 32562349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 40460817 - 40460725
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtg 104  Q
    ||||||| ||||||||| ||||||||||  | ||||||| |||| |||  ||| |||||||||||||||||  |||| |||| ||||||||||    
T  40460817 aaatttaataattattcatttaaaaaatcaattattacagtttccaatttattcaatatacaatttttcattaaaaacttactatttaaagtg 40460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 30822870 - 30822772
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaattt-ttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||||||  ||||||| || | |||||||||||  | |||||| || | ||||||| || ||| ||||||||||||||||||||||||||    
T  30822870 aaatttagtaattattctcttaaaaagttaattattacaattttcattgcattgaaaacacaatttatttata-aaaatttaccatttaaagtgcttaaa 30822772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 18433047 - 18432977
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat 82  Q
    ||||||||||||||||| |||||||  || ||| ||||||||| ||||| ||| ||||||||| |||||||    
T  18433047 aaatttagtaattattcttttaaaatgttaactgttacaatttttaatgtattcaatatacaacttttcat 18432977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 39150583 - 39150692
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaat-ttaccattta 99  Q
    |||| |||| |||||||||||||||||| | |||||| |  |||||||||||||  |||||||| |||| | || ||||||| |||||| |||| | |||    
T  39150583 ttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatacataaattttcat-taaaatcttactagtta 39150681  T
Q  100 aagtgcttaaa 110  Q
    |||||||||||    
T  39150682 aagtgcttaaa 39150692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 42791247 - 42791134
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||||||||||||  |||||||  |||||||| |  ||||| || ||||  |||||||| |||| |||  |||| ||||||||||||| ||||||    
T  42791247 ttaagcatcttaaatttaacaattatttttttaaaaagtcaactatcactattttaaatgcattcaatacacagctttttatataaaatttactatttaa 42791148  T
Q  101 agtgcttaaaaagt 114  Q
    | | ||||||||||    
T  42791147 aatacttaaaaagt 42791134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8365504 - 8365572
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaata 69  Q
    ||||||||| |||||||| ||||||||| ||||||||||  ||||||||||| |  |||||||| ||||    
T  8365504 ttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaata 8365572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 17552844 - 17552912
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaattttt 79  Q
    |||||||| ||||||||  |||||||| |  ||||||| ||||| ||||| ||||||||||||||||||    
T  17552844 taaatttaataattatttttttaaaaagtcaactattataatttttaatgtatttaatatacaattttt 17552912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 3982277 - 3982403
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||  |  ||||| |  ||||||| ||||| ||||||||| |||| |||| |||| ||| ||||||||| |||||||||| |||||     
T  3982277 aaatttagtaattatttttagaaaaagtcaactattataatttataatgcattgaatagacaacttttaata-aaaatttactatttaaagtgtttaaag 3982375  T
Q  112 agtaccccgaaaacactctataacattt 139  Q
    ||| | ||| | ||||||  ||||||||    
T  3982376 agtgcaccggagacactcgttaacattt 3982403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8372996 - 8373047
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaat 52  Q
    ||||||||| |||||||| ||||||||| ||||||||||  |||||||||||    
T  8372996 ttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaat 8373047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 43397079 - 43397012
Alignment:
Q  42 actattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaa 109  Q
    ||||||| |||||| ||||||||||||| |||| |||||||  |||| |||| |||||||||| ||||    
T  43397079 actattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgtttaa 43397012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 38491233 - 38491303
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat 82  Q
    ||||||||||||||||   ||||||| |  |||||||||||||  |||||||| |||| ||||||||||||    
T  38491233 aaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaatttttcat 38491303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 38748815 - 38748717
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||| |||||||| |||||||| |  ||||||| |||||  |||||| | |||| |||| |||||||| | || |||| | ||||||||||||||    
T  38748815 aaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttactaattaaagtgcttaaa 38748717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 7212780 - 7212837
Alignment:
Q  7 atcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatt 64  Q
    |||| ||||||||||||||| | |||||||| || || ||||||||||| ||||||||    
T  7212780 atctcaaatttagtaattatacttttaaaaagttaacaattacaatttccaatgcatt 7212837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34409735 - 34409843
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||| ||||||||||||||| ||  |||  |||||  | ||||| |||||| |||||||| |||| ||| ||||||||  |||| |||||||||||    
T  34409735 ttaagcattttaaatttagtaattttttttttttaaaatcaattattataatttccaatgcattcaatacaca-tttttcattaaaaacttaccatttaa 34409833  T
Q  101 agtgcttaaa 110  Q
    ||||| ||||    
T  34409834 agtgcataaa 34409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 44829284 - 44829400
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| || ||||  |  ||||||||||||| |||| |||| |||| |||| |||| || ||||| |||||  ||||||| ||||||     
T  44829284 aaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttttat-taaaacttaccgattaaagtacttaaag 44829382  T
Q  112 agtaccccgaaaacactc 129  Q
    |||  |||| ||||||||    
T  44829383 agtgtcccggaaacactc 44829400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 50341961 - 50341845
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| |||||||| |  |||||||||||||| || ||||| |||| |||| ||||||| |||||||||| || |||||||||||||     
T  50341961 aaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaag 50341862  T
Q  112 agtaccccgaaaacact 128  Q
    |||||||||||||||||    
T  50341861 agtaccccgaaaacact 50341845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 7852649 - 7852530
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||||| |||| |||||||  |||| |||| ||||||    
T  7852649 ttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttactatttaa 7852550  T
Q  101 agtgcttaaaaagtaccccg 120  Q
    |||||||||| ||| |||||    
T  7852549 agtgcttaaagagtgccccg 7852530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 35777793 - 35777686
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| |||| |||||||  |||| |||||||||||||||||||||     
T  35777793 aaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttaccatttaaagtgcttaaag 35777694  T
Q  112 agtacccc 119  Q
    | ||||||    
T  35777693 aatacccc 35777686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41462050 - 41462159
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||| ||| ||||||||||||||| |||||||| |  ||||||||||||||| |||||||||||| | ||||||||||  |||| |||| ||||||    
T  41462050 ttaagcattttatatttagtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaa 41462149  T
Q  101 agtgcttaaa 110  Q
    | ||||||||    
T  41462150 aatgcttaaa 41462159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24175503 - 24175384
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||||||||||| ||||| |||||||  |  |||||||||||||  ||||||||||||| |||| ||||| || |||| |||||||||||    
T  24175503 ttaagcatcctaaatttagtaaatattcttttaaaag-taaactattacaattttaaatgcatttaatacacaacttttcgtacaaaacttaccatttaa 24175405  T
Q  101 agtgcttaaaaagtaccccga 121  Q
    |||||||||| ||| ||||||    
T  24175404 agtgcttaaagagtgccccga 24175384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 53014311 - 53014203
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    ||||||||| ||||||||||||||||   ||||||||||| |||||||||||||| ||| |||| |||| |||| |||| ||  ||||  ||||||||||    
T  53014311 ttaaacatcctaaatttagtaattatctttttaaaaaattaactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaa 53014212  T
Q  101 agtgcttaa 109  Q
    |||||||||    
T  53014211 agtgcttaa 53014203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 31429298 - 31429389
Alignment:
Q  21 aattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaa 112  Q
    |||||||| ||||||||||  |||||||||||||| |||||||| |||| |||| ||||||| ||||| |||| | ||||||||||||||||    
T  31429298 aattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaaaa 31429389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 8297883 - 8297981
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||| |||||||  |  ||| |||||||||| |||||||| |||| ||||||||||||  |||| |||| ||||||||||||||||    
T  8297883 aaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaa 8297981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 49400613 - 49400727
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||||||||||||||||| ||||||||||  |||||||||||||| |||| |||||||| || | |||||||  ||| |||   ||||||    
T  49400613 ttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaatacacgacttttcattaaaattttgttatttaa 49400712  T
Q  101 agtgcttaaaaagta 115  Q
    |||||||||| ||||    
T  49400713 agtgcttaaagagta 49400727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 45900254 - 45900136
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| ||||||||| |||||||| |||| ||| |  ||||| |||||||| |||||||| |||| |||| ||||||||| ||| |||| | ||||    
T  45900254 ttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaatacacaacttttcatatgaaacttactaattaa 45900155  T
Q  101 agtgcttaaaaagtacccc 119  Q
    |||||||||| ||| ||||    
T  45900154 agtgcttaaagagtgcccc 45900136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 50426990 - 50427099
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||||| ||||||||||||||||| ||| |||| |  |||||||||||||| |||||| | || | |||| |||||||  ||||||||| ||||||    
T  50426990 ttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactatttaa 50427089  T
Q  101 agtgcttaaa 110  Q
    |||| |||||    
T  50427090 agtgtttaaa 50427099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 25115357 - 25115259
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||  |||||||| || |||||||||||||| |||||| | |||| |||| |||| ||| |||| |||| |||||||||| ||||||    
T  25115357 aaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaactttttata-aaaacttactatttaaagtgtttaaaa 25115259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 47995832 - 47995733
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||| || |||||||| || | |||||||||||  |||||||| |||| | || |||||||  |||| |||| ||||||||||||||||    
T  47995832 taaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttacaatttaaagtgcttaaa 47995733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 37440837 - 37440936
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||||||  |||||||| |  |||||||||||||  ||||  || |||| | ||||||||||   |||||||||||||||||| ||||||    
T  37440837 taaatttagtaattattattttaaaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaaa 37440936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 24229740 - 24229642
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||| ||| |||| |  | ||| |||||||  ||||||||||||| ||||||||||||  |||| ||   ||||||||||||||||    
T  24229740 aaatttagtaattattctttttaaaagtaaattatcacaattttcaatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaa 24229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 23605702 - 23605634
Alignment:
Q  71 acaatttttcatataaaatttaccatttaaagtgcttaaaaagtaccccgaaaacactctataacattt 139  Q
    |||| |||||||  |||| |||||||||||||||||||||||||| |||| | ||||||  ||||||||    
T  23605702 acaacttttcattaaaaacttaccatttaaagtgcttaaaaagtatcccggagacactcgttaacattt 23605634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27953145 - 27953046
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||||| |||||||||| |||||  |||||||| || |||||||||||||  |||||||| |||| |||| ||||| |  |||| |||||||||||    
T  27953145 ttaagcatctcaaatttagta-ttattattttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttaccatttaa 27953047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 23606023 - 23605964
Alignment:
Q  10 ttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaata 69  Q
    ||||||||||||||||||| |||||||| || | |||||||||||| |||  ||||||||    
T  23606023 ttaaatttagtaattattcttttaaaaagttaattattacaatttccaatatatttaata 23605964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 13585291 - 13585257
Alignment:
Q  76 ttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||| |||||||||||||||||||||    
T  13585291 ttttcatataaaacttaccatttaaagtgcttaaa 13585257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23689883 - 23689941
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaat 59  Q
    ||||| || ||||||||||||||||||| ||||||||||  |||| |||||||| ||||    
T  23689883 ttaaagattttaaatttagtaattattcttttaaaaaatcaactaatacaatttttaat 23689941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 37060581 - 37060663
Alignment:
Q  33 aaaaaattgactattacaatttctaatgcatttaatatacaattttt-catataaaatttaccatttaaagtgcttaaaaagt 114  Q
    |||||||  ||||||| |||||  |||||| |||||| | ||||||| |||  |||| |||||||||||||||||||||||||    
T  37060581 aaaaaatcaactattataattttcaatgcaattaatacataattttttcattaaaaacttaccatttaaagtgcttaaaaagt 37060663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 48337557 - 48337667
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat-ataaaatttaccattta 99  Q
    ||||||||| | ||||||  ||||||| |||||||||||  |||||||||||||  |||||||| | ||  |||||||| || | |||| |||| |||||    
T  48337557 ttaaacatccttaatttaacaattatttctttaaaaaatcaactattacaattttcaatgcattgattactcaattttttataaaaaaacttactattta 48337656  T
Q  100 aagtgcttaaa 110  Q
    || ||||||||    
T  48337657 aaatgcttaaa 48337667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 14031388 - 14031347
Alignment:
Q  57 aatgcatttaatatacaatttttcatataaaatttaccattt 98  Q
    |||||||| ||||||||| ||||||||||||| |||||||||    
T  14031388 aatgcattcaatatacaacttttcatataaaacttaccattt 14031347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 20394650 - 20394707
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaata 69  Q
    ||||||||||||||||| |||||||| |  |||||||||||||| ||| |||| ||||    
T  20394650 aaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaata 20394707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 34391801 - 34391673
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| |||| ||| |    |||||||||||| |||||| | |||| |||| |||| ||  |||| |||| |||| ||||| |||||     
T  34391801 aaatttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaag 34391702  T
Q  112 agtaccccgaaaacactctataacatttt 140  Q
    |||||| |||||  ||||  |||||||||    
T  34391701 agtacctcgaaagtactcgttaacatttt 34391673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 49084496 - 49084408
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatg-catttaatatacaatttttcatataaaatttaccattt 98  Q
    |||||||||||||||||| |||||||| |  |||||||||||||  ||||  ||| |||| |||| |||||||  |||| |||||||||    
T  49084496 taaatttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttaccattt 49084408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 18229696 - 18229569
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| |||||||| || |||||||||||||| ||| |||| |||| ||||||||||||  |||| |||||||||||||||||||||     
T  18229696 aaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttaccatttaaagtgcttaaag 18229597  T
Q  112 agtaccccgaaaacactctataacattt 139  Q
    |||  |||| || |||||  ||||||||    
T  18229596 agtgtcccggaagcactcgttaacattt 18229569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 30501234 - 30501126
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| |||||||| |  | |||||||||||| ||| |||| |||| |||| ||||||| ||||| |||| ||||||||||||||| |    
T  30501234 aaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaaca 30501135  T
Q  112 agtaccccg 120  Q
    ||| |||||    
T  30501134 agtgccccg 30501126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 30541577 - 30541469
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| |||||||| |  | |||||||||||| ||| |||| |||| |||| ||||||| ||||| |||| ||||||||||||||| |    
T  30541577 aaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaaca 30541478  T
Q  112 agtaccccg 120  Q
    ||| |||||    
T  30541477 agtgccccg 30541469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 16667386 - 16667284
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||| ||||||||| |||||||| |  | |||||||||||| ||| |||| |||| ||||||||||||  |||| |||| |||||||||||||||||    
T  16667386 aaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaaa 16667287  T
Q  112 agt 114  Q
    |||    
T  16667286 agt 16667284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 34899230 - 34899132
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||| |||||||||||| ||||||||    | |||||||||||||||||||||||||||| || ||||||| ||||| |||| |||||||||| |||||    
T  34899230 aaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttactatttaaagtgtttaaa 34899132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3140815 - 3140924
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    ||||||||| |||||||| ||||||||| |||||||| |  |||||||||||||  ||| |||||||||||||| |||| || ||||| |||  ||||||    
T  3140815 ttaaacatcataaatttaataattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaacttattatttaa 3140914  T
Q  101 agtgcttaaa 110  Q
    |||| |||||    
T  3140915 agtgtttaaa 3140924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 9276674 - 9276576
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||  ||||||||||  ||||||| |||||  |||||||| |||| | || |||||||  |||| |||| ||||||||||||||||    
T  9276674 aaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaa 9276576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 7719225 - 7719318
Alignment:
Q  21 aattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaagt 114  Q
    |||||||| ||||||||||  |||||||||||||| |||  ||| |||| |||| |||||||  |||| |||  ||||||||||||||||||||    
T  7719225 aattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttattatttaaagtgcttaaaaagt 7719318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 39558859 - 39558734
Alignment:
Q  14 atttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaag 113  Q
    ||||||||||||||| |||||||| |  ||| |||||||||| ||||||||| ||| || | ||||||   |||| |||| ||||||| ||||||| |||    
T  39558859 atttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttactatttaaaatgcttaagaag 39558760  T
Q  114 taccccgaaaacactctataacattt 139  Q
    | | ||||| ||||||  ||||||||    
T  39558759 tgctccgaagacactcgttaacattt 39558734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 5815168 - 5815037
Alignment:
Q  9 cttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgctta 108  Q
    |||||||||||||||||||| |||||||| || ||||  |||||||| ||| |||| || |||||  |||||||  |||| ||||   || |||||||||    
T  5815168 cttaaatttagtaattattcatttaaaaatttaactaccacaatttccaatacattcaacatacatcttttcattaaaaacttactgctttaagtgctta 5815069  T
Q  109 aaaagtaccccgaaaacactctataacatttt 140  Q
    || ||| |||| ||| |||||  |||||||||    
T  5815068 aagagtgccccaaaagcactcgttaacatttt 5815037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 8208200 - 8208318
Alignment:
Q  21 aattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaagtaccccg 120  Q
    |||||||| |||||||| |  | ||||||||||| ||||||||| | || | || ||||||||||||| ||| ||||||| ||| ||||| ||||| |||    
T  8208200 aattattcttttaaaaagtcaattattacaatttttaatgcattcattacataacttttcatataaaacttatcatttaatgtgtttaaagagtactccg 8208299  T
Q  121 aaaacactctataacattt 139  Q
     || |||||  ||||||||    
T  8208300 gaagcactcgttaacattt 8208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 30104816 - 30104914
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||| ||||  |||||||| |  || ||||||||||| |||||||| |||| |||| |||||||  |||| |||||| |||||||| |||||    
T  30104816 aaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttaccacttaaagtgtttaaa 30104914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 112591 - 112482
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||| ||||||||||||| ||| |||| |  |||  ||||||||  |||| |||||||| ||||||||||||  |||||||   ||||||    
T  112591 ttaagcatcataaaattagtaattattcttttgaaaagtcaactgatacaattttcaatgtatttaatacacaatttttcattaaaaatttgttatttaa 112492  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  112491 agtgcttaaa 112482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17692263 - 17692380
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| ||||||||||||||||||  ||||||| |  ||| |||||||||  |||||| ||| || |||| |||||||  ||||  ||| |||| |    
T  17692263 ttaagcatcctaaatttagtaattattctcttaaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactatttta 17692362  T
Q  101 agtgcttaaaaagtaccc 118  Q
    |||||||||| |||||||    
T  17692363 agtgcttaaagagtaccc 17692380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40530540 - 40530467
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaa 74  Q
    |||||||||| | ||||||||||||||  |||||||| || ||||| |||||||||||| |||| |||| ||||    
T  40530540 ttaaacatctcatatttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaa 40530467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 7968447 - 7968510
Alignment:
Q  57 aatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaagtaccccg 120  Q
    ||||||||||||| |||| |||||||  |||| |||| |||||||||||||||| ||| |||||    
T  7968447 aatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccg 7968510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 15720079 - 15720177
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||  |||||||| |||||||| |  |||||||||||||| |||| | |||||| |||| |||||||| | || |||| | |||||||| |||||    
T  15720079 aaatttatcaattattcttttaaaaagtcaactattacaatttccaatgaacttaatacacaacttttcataaagaacttactaattaaagtgtttaaa 15720177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 2918661 - 2918592
Alignment:
Q  42 actattacaatttctaatgcatttaatatacaatttttca-tataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||| |||||| ||||||||||||| |||| |||||| || ||| ||||| ||||||| ||||||||    
T  2918661 actattataatttccaatgcatttaatacacaacttttcattaaaaattttacaatttaaaatgcttaaa 2918592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 18963825 - 18963914
Alignment:
Q  13 aatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat-ataaaatttaccatttaaa 101  Q
    |||||||||||||||| |   |||| || |||||||||||||  |||||||| |||| ||||||||| || | |||||| ||||||||||    
T  18963825 aatttagtaattattcttgagaaaagttaactattacaattttcaatgcattaaatacacaattttttataaaaaaattaaccatttaaa 18963914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 41583555 - 41583635
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttac 93  Q
    |||||||| ||||||||||| ||||| || | |||||||| ||| |||||||| |||| |||  |||||||| |||||||||    
T  41583555 aaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcata-aaaatttac 41583635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 4384230 - 4384113
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||||||| ||||||||||  |||||||||||||| |||||||| |||| ||||  ||||||  |||||||| |||||||||||||||||    
T  4384230 taaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaa-ctttcattaaaaatttatcatttaaagtgcttaaa 4384132  T
Q  111 aagtaccccgaaaacactc 129  Q
     |||  ||||| |||||||    
T  4384131 gagtgtcccgagaacactc 4384113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 2258185 - 2258087
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||| ||||||||| |||||||| || |  |||||||||| ||||| |||||||| |||| ||||||| ||||| |||||||||||||||||||||    
T  2258185 aaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaacttttcatttaaaacttaccatttaaagtgcttaaa 2258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 27801321 - 27801184
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||||||| |||||||| |  |||||||||||||  |||||||| | || |||| |||| ||  |||| |||| ||||||||||||||||    
T  27801321 taaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaa 27801222  T
Q  111 aagtaccccgaaaacactctataacatttttcttattt 148  Q
     |||||||| | | |||||  ||||||||  |||||||    
T  27801221 gagtaccccaagagcactcgttaacatttcccttattt 27801184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12829976 - 12829866
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||||| ||||||| ||||||||  |||||||| |  | ||||||||||   |||||||| |||||| ||||||||||  |||| |||||||||||    
T  12829976 ttaagcatctaaaatttaataattattattttaaaaagtctattattacaattaacaatgcattcaatatataatttttcattaaaaacttaccatttaa 12829877  T
Q  101 agtgcttaaaa 111  Q
    |||||||||||    
T  12829876 agtgcttaaaa 12829866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 36356046 - 36355953
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||| ||||||||||| ||||||||     ||||| ||||||||||||||||||||| |||| |||||||  |||| |||||||||||||| ||||||    
T  36356046 aaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaa 36355953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 42636460 - 42636362
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||  |  ||||| |  |||||||||||||  ||||||||||||| |||| |||||||  |||| |||||||||||||||||||||    
T  42636460 aaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtgcttaaa 42636362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 1135174 - 1135271
Alignment:
Q  13 aatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||||| |||||||| |  |||||||||||||  |||| ||| ||||||||| ||||| |  |||| ||||||||||||||| |||||    
T  1135174 aatttagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaagtgtttaaa 1135271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1369964 - 1369855
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| ||||||||| |||||||| |||||||| |  ||||| |||||||| |||||||| |||| | || ||||||||||||| |||  | ||||    
T  1369964 ttaagcatcctaaatttagcaattattcttttaaaaagtcaactatcacaatttccaatgcattcaatagataacttttcatataaaacttattaattaa 1369865  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  1369864 agtgcttaaa 1369855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 884417 - 884526
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcct-ttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccattta 99  Q
    ||||||||| |||||||||||||||||| | | |||||||  | |||||||||||  |||| |||||||| ||||||||||||  |||| || | |||||    
T  884417 ttaaacatcataaatttagtaattattcttataaaaaaatcaattattacaattttcaatg-atttaatacacaatttttcattaaaaactttcaattta 884515  T
Q  100 aagtgcttaaa 110  Q
    |||||||||||    
T  884516 aagtgcttaaa 884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 24695760 - 24695857
Alignment:
Q  13 aatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    |||||||||||||||  |||||||| |  ||||||||||||||||||||| | |||| |||| |||| || ||||| |||| |||||||||| ||||||    
T  24695760 aatttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttttat-taaaacttactatttaaagtgtttaaaa 24695857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 12954730 - 12954831
Alignment:
Q  2 taaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaa 101  Q
    ||||||||| ||||||||||||||||  ||| ||||||  ||||||| |||||  |||  |||||||| |||||||||||   |||||||| ||||||||    
T  12954730 taaacatctcaaatttagtaattattttttttaaaaatcaactattataattttcaatagatttaatacacaatttttcaataaaaatttatcatttaaa 12954829  T
Q  102 gt 103  Q
    ||    
T  12954830 gt 12954831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 12684588 - 12684488
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||| ||||||||| || ||| |||  ||||||||||||||||||||||| | || | || |||| ||  ||||||||  |||||||||||||||||    
T  12684588 aaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttattatttaaagtgcttaaaa 12684489  T
Q  112 a 112  Q
    |    
T  12684488 a 12684488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 3146050 - 3146100
Alignment:
Q  14 atttagtaattattcctttaaaaaattgactattacaatttctaatgcatt 64  Q
    ||||||||||||||| |||||||| || |||||||||||||| ||||||||    
T  3146050 atttagtaattattcttttaaaaagttaactattacaatttccaatgcatt 3146100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33949655 - 33949546
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||| ||||||||||||| ||||  |||||||| |  |||||||||||||| |||||| | |||| |||| |||||||| | || |||| | ||||    
T  33949655 ttaagcatattaaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataaataacttactaattaa 33949556  T
Q  101 agtgcttaaa 110  Q
    |||| |||||    
T  33949555 agtgtttaaa 33949546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 37813497 - 37813425
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattga-ctattacaatttctaatgcatttaatatacaatttttcata 83  Q
    ||||||||||||||||| ||||||||| | | | ||||||||||| |||||||| |||| |||| ||||||||    
T  37813497 aaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcata 37813425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 28207636 - 28207735
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaa-gtgcttaaa 110  Q
    |||||||  ||| |||| |||||||| |  |||||||||||||| |||||||| |||| |||| |||||||  |||| || ||||||||| |||||||||    
T  28207636 aaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttccatttaaaggtgcttaaa 28207735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 9024500 - 9024562
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaa 74  Q
    ||||||||||||||||| || |||||||  ||||||||||||| | ||||||| |||| ||||    
T  9024500 aaatttagtaattattctttcaaaaaatcaactattacaattttttatgcattaaatacacaa 9024562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 33013057 - 33013155
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||  |||||||| |||||||| |  |||||||||||||| |||| | | |||| |||| |||||||| | || |||| | ||||||||||||||    
T  33013057 aaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttactaattaaagtgcttaaa 33013155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 2072381 - 2072465
Alignment:
Q  16 ttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaa 101  Q
    ||||||||||||| |||||||| |  || ||||||| ||||||| ||||||||| | || |||||||| |||  ||||||||||||    
T  2072381 ttagtaattattcttttaaaaagtcaaccattacaacttctaatacatttaatacataa-ttttcataaaaatcttaccatttaaa 2072465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 1334978 - 1334880
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||| ||||||||| || |||||||  |||||||||||||| |||||||| |||||||||||||||||  |||| ||| |||||||||||||||||    
T  1334978 aaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatcatttaaagtgcttaaa 1334880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19890294 - 19890185
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||||||||||||||||| |||||||| |  |||||||||||||| ||||||||||||| |||| |||||||  |||| |||  |||| |    
T  19890294 ttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttattatttta 19890195  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  19890194 agtgcttaaa 19890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 34904880 - 34904784
Alignment:
Q  14 atttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||| ||||||||||  ||||||||||||| ||||| |||||||| | ||||||||||  | || |||| ||||||||||||||||    
T  34904880 atttagtaattattcttttaaaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttacaatttaaagtgcttaaa 34904784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 4762361 - 4762463
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||  |||| ||| |  ||||||| |||||  |||||||| |||| ||||||||| ||  ||||||||| |||||||||| ||||||    
T  4762361 aaatttagtaattattattttataaagtcaactattataattttcaatgcattcaatacacaattttttattaaaaatttactatttaaagtgattaaaa 4762460  T
Q  112 agt 114  Q
    |||    
T  4762461 agt 4762463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 37993079 - 37993188
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    ||||||||  |||||||| ||| ||||| || |||||||  |||||||||||||  ||||||||||||| | ||||||| ||  ||||||||| ||||||    
T  37993079 ttaaacattctaaatttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaa 37993178  T
Q  101 agtgcttaaa 110  Q
    | || |||||    
T  37993179 aatgtttaaa 37993188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41933132 - 41933241
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||||||| | |||||||| |||||||| |||||||| |  |||||||||||||  |||||| | | || |||| |||| ||| ||||||||| | ||||    
T  41933132 ttaaacatatcaaatttagcaattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaattaa 41933231  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  41933232 agtgcttaaa 41933241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 43228924 - 43228843
Alignment:
Q  7 atcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaa 88  Q
    |||| |||||||| ||||||||||||||||| || | ||||| ||||| |||| |||| |||||||||||||| ||| ||||    
T  43228924 atctaaaatttagcaattattcctttaaaaagttaattattataatttttaattcattaaatatacaattttttataaaaaa 43228843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 19514882 - 19514981
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||  |||||||| ||| |||| |  ||||||| ||||   |||||| | ||||||||| ||||||||||||| |||| ||||||||||||||||    
T  19514882 taaatttaacaattattctttttaaaagtcaactattataattatcaatgcaatgaatatacaacttttcatataaaacttacaatttaaagtgcttaaa 19514981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 20064922 - 20065020
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||| |||||||||||| |||||||| |  |||||||||||||  |||| ||| |||| ||||||||||||| |||  || | ||||||||||||||||    
T  20064922 taaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaaatacacaatttttcata-aaacctttctatttaaagtgcttaaa 20065020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 9449047 - 9448950
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||| |||||||| |  ||||||| |||||  ||| |||| |||| |||| |||||||  |||| ||||||||||||||| |||||    
T  9449047 aaatttagtaattattcttttaaaaa-tcaactattataattttcaatacattcaatacacaacttttcattaaaaacttaccatttaaagtgtttaaa 9448950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5524462 - 5524579
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| ||||| |||||||||||  ||| |||| || | |||||||| || ||||||||| |||  |||| |||| || ||| |||||| ||||||    
T  5524462 ttaagcatcctaaatatagtaattatttttttgaaaagttaattattacaacttttaatgcattcaatgcacaactttttatttaagatttactatttaa 5524561  T
Q  101 agtgcttaaaaagtaccc 118  Q
    ||||||||| || |||||    
T  5524562 agtgcttaacaaataccc 5524579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31452451 - 31452343
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||||||||  || |||||||||||||| |||||||| |  || ||||||||||  |||||||| |||| |||| |||| ||  |||| |||| ||||||    
T  31452451 ttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatttaa 31452353  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  31452352 agtgcttaaa 31452343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 31017402 - 31017274
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||| || ||||| |  | ||||  |||||  ||||||||||||| |||| |||||||  |||| ||  |||||||||||||||||     
T  31017402 aaatttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttcatttaaagtgcttaaag 31017303  T
Q  112 agtaccccgaaaacactctataacatttt 140  Q
    | | |||||||  |||||  |||||||||    
T  31017302 aatgccccgaaggcactcgttaacatttt 31017274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 33067816 - 33067716
Alignment:
Q  10 ttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaa 109  Q
    ||||||| ||||||||||| |||||||| |  | | ||||||||| ||||| ||| |||| ||||||||| |||  ||| ||| ||||||||||| ||||    
T  33067816 ttaaattcagtaattattcatttaaaaagtcaattgttacaatttataatgtattaaatacacaatttttaataagaaacttatcatttaaagtgtttaa 33067717  T
Q  110 a 110  Q
    |    
T  33067716 a 33067716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 14295640 - 14295707
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaattttt 79  Q
    ||||||||||||||||| |||||||  || |||||||||||||  |||||||| |||| |||| ||||    
T  14295640 aaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttt 14295707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 29239313 - 29239245
Alignment:
Q  42 actattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||  |||||||| |||| || |||||||||  || |||||| | ||||||||||||||    
T  29239313 actattacaattttcaatgcattcaatacaccatttttcattaaagatttactaattaaagtgcttaaa 29239245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25886171 - 25886309
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||||||| |||||||||| ||||||||  ||| ||| |  |||||||||||||  ||| ||||||||| |||| ||||||||||||| |||||||||||    
T  25886171 ttaaacattttaaatttagaaattattctcttagaaagtcaactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaa 25886270  T
Q  101 agtgcttaaaaagtaccccgaaaacactctataacattt 139  Q
    |||| ||||| |||  ||  |||||||||  ||||||||    
T  25886271 agtgtttaaagagtgtcctaaaaacactcattaacattt 25886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 43234791 - 43234900
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| || ||||||||||||||| ||||||||||  |||||||||||||| | | |||| |||| | || |||||||  ||||||||| ||||||    
T  43234791 ttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatttaa 43234890  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  43234891 agtgcttaaa 43234900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 3692889 - 3693017
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat-ataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||| |||||||| ||||||||||  |||||||||||||| |||||| | |||| |||||||||||| | |||| |||| | ||||| | ||||||    
T  3692889 aaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaa 3692988  T
Q  111 aagtaccccgaaaacactctataacattt 139  Q
     ||| ||||| ||||||||  ||||||||    
T  3692989 gagtgccccggaaacactcgttaacattt 3693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 27123286 - 27123394
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    |||||||||||| |||| |||||||| |  |||||||||||||| |||||||| | || |||| ||||| |  |||| |||||||||||||||||||||     
T  27123286 aaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttaccatttaaagtgcttaaag 27123385  T
Q  112 agtaccccg 120  Q
    ||| |||||    
T  27123386 agtgccccg 27123394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 42936024 - 42936109
Alignment:
Q  17 tagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtg 104  Q
    |||||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||||||||||| ||||| || | ||||||||||    
T  42936024 tagtaattattcttttaaaaaatcaactattacaatttc-aatgcatttaatacacaatttttcat-taaaacttgctatttaaagtg 42936109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 26239636 - 26239529
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||| |||||||| || ||||| || ||  ||| | |||| |||||||| |||||||||||||||||  |||| |||| |||||||||| |||||    
T  26239636 taaatttagcaattattctttcaaaaagttaacgtttatagtttccaatgcattgaatatacaatttttcattaaaaacttactatttaaagtgtttaaa 26239537  T
Q  111 aagtaccc 118  Q
     |||||||    
T  26239536 gagtaccc 26239529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 28663224 - 28663125
Alignment:
Q  21 aattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaagtaccccg 120  Q
    |||||||| |||||||| |  |||||||||||||  |||||||| |||| ||||||||||||  |||  |||| |||||||||||||||| ||| |||||    
T  28663224 aattattcttttaaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgccccg 28663125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 28770493 - 28770587
Alignment:
Q  16 ttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||| ||| |||| |  |||||||||||||| |||||||| |||| |||| |||||||  |||| |||| ||||| ||||||||||    
T  28770493 ttagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttagagtgcttaaa 28770587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29711598 - 29711489
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    ||||||||||||||||||| |||| ||| ||||||||||  || |||| |||||  |||| ||| | || | ||||||| |||||||||||| ||||| |    
T  29711598 ttaaacatcttaaatttagaaatttttcttttaaaaaatcaacaattataattttcaatgtattcattacataattttttatataaaatttatcatttta 29711499  T
Q  101 agtgcttaaa 110  Q
    |||| |||||    
T  29711498 agtgtttaaa 29711489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 35496667 - 35496559
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||| |||   |||||||| |  |||||||||||||  |||||||| | || ||||||||||||  |||| ||||||||||||||| |||||     
T  35496667 aaatttagtaactatatttttaaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttaccatttaaagtgtttaaag 35496568  T
Q  112 agtaccccg 120  Q
    ||| |||||    
T  35496567 agtgccccg 35496559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 21727499 - 21727393
Alignment:
Q  13 aatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaa 112  Q
    |||||||||||||||| |||||||| |  |||||||||||||| ||| |||| |||| |||| | || ||  |||| ||| ||||| ||||||||||| |    
T  21727499 aatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatttgaagtgcttaaaga 21727400  T
Q  113 gtacccc 119  Q
    || ||||    
T  21727399 gtgcccc 21727393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 44537355 - 44537461
Alignment:
Q  14 atttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaag 113  Q
    ||||||||||||||| |||||||| |  ||||||| |||||| | || || ||||| | || |||||||  |||| |||| |||||||||||||||| ||    
T  44537355 atttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttactatttaaagtgcttaaagag 44537454  T
Q  114 taccccg 120  Q
    | |||||    
T  44537455 tgccccg 44537461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 37158450 - 37158358
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtg 104  Q
    ||||||||||||||||  |||||||| |  |||||||||||||  |||||| | |||| | ||||||| ||| ||||||||  ||||||||||    
T  37158450 aaatttagtaattattattttaaaaagtcaactattacaattttcaatgcagtgaatacataattttttataaaaaatttattatttaaagtg 37158358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 2347429 - 2347555
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||| |||||||  |||||||  | |||||||| ||  |||||||| | || | || |||| ||| ||||||||| ||| || |||||||||     
T  2347429 aaatttagtaaatattcctcaaaaaaatcaaatattacaaatttcaatgcattgattacataaattttaata-aaaatttactattaaaggtgcttaaag 2347527  T
Q  112 agtaccccgaaaacactctataacattt 139  Q
    ||||||||| || |||||| ||||||||    
T  2347528 agtaccccggaagcactctttaacattt 2347555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 9719024 - 9718990
Alignment:
Q  76 ttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||| |||||||||||||||||||||    
T  9719024 ttttcatataaaacttaccatttaaagtgcttaaa 9718990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 35731311 - 35731397
Alignment:
Q  24 tattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||| |||||||| |  |||||||||||||| |||||| |||||| |||| |||| ||| | || |||| | ||||||||||||||    
T  35731311 tattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttactaattaaagtgcttaaa 35731397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 39321076 - 39320978
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||  |||||||| |||||||| |  |||||||||||||  |||| ||| |||| |||| |||| ||| |||| |||| | ||||||||||||||    
T  39321076 aaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttactaattaaagtgcttaaa 39320978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43224192 - 43224083
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| |||| ||||  ||||||| |||||||| |  ||| |||||||||| |||| || ||||| |||| |||||||  |||| || | ||||||    
T  43224192 ttaagcatcctaaaattagatattattcttttaaaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgctatttaa 43224093  T
Q  101 agtgcttaaa 110  Q
    ||||||||||    
T  43224092 agtgcttaaa 43224083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26197539 - 26197595
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttcta 57  Q
    |||||||||| |||||||  || |||||||||||||| |  ||||||||||||||||    
T  26197539 ttaaacatctcaaatttaaaaactattcctttaaaaattcaactattacaatttcta 26197595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 35923596 - 35923540
Alignment:
Q  13 aatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaata 69  Q
    |||||||| ||||||| ||| ||||||  |||||||||||||| |||||||| ||||    
T  35923596 aatttagtcattattctttttaaaaataaactattacaatttccaatgcattcaata 35923540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 44592878 - 44592950
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatat 84  Q
    ||||||| ||||||||| |||||||| || |||||||||||||  |||| ||| |||| |||| |||| ||||    
T  44592878 aaatttaataattattcttttaaaaagttaactattacaattttcaatgtattcaatacacaacttttaatat 44592950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 103754 - 103645
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||||||  ||||||||||||||| |||||||| | || ||||||||||| ||||||||| |||||||||||||||||  ||||||||  |||| |    
T  103754 ttaagcatctttgatttagtaattattcttttaaaaagtcgaatattacaatttttaatgcattcaatatacaatttttcattaaaaatttattatttta 103655  T
Q  101 agtgcttaaa 110  Q
    | ||||||||    
T  103654 aatgcttaaa 103645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 31855096 - 31855176
Alignment:
Q  42 actattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaaagtaccccgaa 122  Q
    |||||||||||||| |||||||| |||||||||||||||||  |||| |||| |||||||||||||||| |||| ||||||    
T  31855096 actattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaagagtatcccgaa 31855176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 17215777 - 17215679
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||  |||||||| |  |||||||||||||  |||||||| |||| ||||||||| ||  |||| |||||||||||||||||||||    
T  17215777 aaatttagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaa 17215679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 24103872 - 24103781
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagt 103  Q
    ||||||||||||||||  ||| ||||||| ||||||||||||| ||||| |||||||| ||||||||| ||  ||||||||  |||||||||    
T  24103872 aaatttagtaattatttgttttaaaaattaactattacaatttttaatgaatttaatacacaatttttaattaaaaatttattatttaaagt 24103781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 30739610 - 30739713
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||||  ||||||| || |||  ||| ||||| |||||||| |||| ||||||||||||  |||||||| ||||| || ||||||||    
T  30739610 taaatttagtaattattctattaaaaagttaactggtacgatttccaatgcattcaatacacaatttttcattaaaaatttatcattttaaatgcttaaa 30739709  T
Q  111 aagt 114  Q
    ||||    
T  30739710 aagt 30739713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1840984 - 1841084
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||| ||||||||| ||||||||| ||||||||||  |||||||||||||| |||||||| |||| |||| |||| ||  |||| ||| |||||||    
T  1840984 ttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatcatttaa 1841083  T
Q  101 a 101  Q
    |    
T  1841084 a 1841084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 1479186 - 1479089
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||| |||| ||||||||    | ||| |||||||  |||||||| |||| |||||||| |||| ||||||||||||||||||||||||||    
T  1479186 aaatttagtaatcattcttttaaaaaggcaattatgacaattttcaatgcattgaatacacaattttacata-aaaatttaccatttaaagtgcttaaa 1479089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9762804 - 9762913
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaa-tttaccattta 99  Q
    ||||||||||||||||||||| || ||| |||||||| |  | ||||| |||||||||| |||| | || |||| ||||||| ||||| |||||||||||    
T  9762804 ttaaacatcttaaatttagtattt-ttcttttaaaaagtcaattattataatttctaatacattcagtacacaacttttcatttaaaaatttaccattta 9762902  T
Q  100 aagtgcttaaa 110  Q
    ||||| |||||    
T  9762903 aagtgattaaa 9762913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 2692524 - 2692426
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||||||||||||  |||||||| |  |||||||||||||| |||| | | |||| |||| |||| || |||||||||| |||||||||| ||||||    
T  2692524 aaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtgaatacacaactttttat-taaaatttactatttaaagtgtttaaaa 2692426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 7421684 - 7421782
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaa-tttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||||||||||||||  |||||||| |  | |||||||||||  ||||||||||||| |||| ||||| ||| ||| ||||| ||||||||||||||||    
T  7421684 aaatttagtaattatttatttaaaaagtcaaatattacaattttcaatgcatttaatacacaactttttaata-aaactttactatttaaagtgcttaaa 7421782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28874400 - 28874481
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat 82  Q
    |||| |||| |||| ||||||||||||| ||| ||||||  ||||||| |||||| |||||||| |||| | ||||||||||    
T  28874400 ttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcat 28874481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 27778765 - 27778863
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattga-ctattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaa 109  Q
    |||||||||||||||||  ||| ||||| | | | |||| |||||  |||||||| |||| ||| ||||||||| |||||||||||||||||||||||||    
T  27778765 taaatttagtaattattttttttaaaaagtcaacgattataattttcaatgcattcaatacaca-tttttcata-aaaatttaccatttaaagtgcttaa 27778862  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 34235466 - 34235415
Alignment:
Q  18 agtaattattcctttaaaaaattgactattacaatttctaatgcatttaata 69  Q
    ||||||||||| ||||||||||| |||||||||||||  ||| |||||||||    
T  34235466 agtaattattcttttaaaaaattaactattacaattttcaatacatttaata 34235415  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 3766289 - 3766383
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgct 106  Q
    |||||| | |||||||| |||||||| |  | ||||||||||| |||| |||| | || | || ||||||||||||| ||| |||||||||||||    
T  3766289 aaatttggaaattattcttttaaaaagtcaattattacaatttataatacattcattacataacttttcatataaaacttatcatttaaagtgct 3766383  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 19293558 - 19293420
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| |||| ||||||||  |||||||  |||||||| || ||||||||||||||  ||||| | ||||  ||| |||||||| ||||  ||| | ||||    
T  19293558 ttaagcatcctaaatttaacaattattattttaaaaagttaactattacaatttccgatgcactcaataaccaacttttcataaaaaacctactaattaa 19293459  T
Q  101 agtgcttaaaaagtaccccgaaaacactctataacattt 139  Q
    |||||||||| ||  ||||||  ||||||  ||||||||    
T  19293458 agtgcttaaagagatccccgaggacactcattaacattt 19293420  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 2864918 - 2864987
Alignment:
Q  42 actattacaatttctaatgcatttaatatacaatttttcat-ataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||||||||  |||||||| |||| |||||||||||| | |||| |||||||||||| || |||||    
T  2864918 actattacaatttacaatgcattaaatacacaatttttcatcaaaaaacttaccatttaaaatgtttaaa 2864987  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 9301915 - 9301992
Alignment:
Q  7 atcttaaatttagtaattattc-ctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcata 83  Q
    ||||||||||||||||||||||  ||||||||||  || ||||  ||||| |||||||| |||||||||  |||||||    
T  9301915 atcttaaatttagtaattattctttttaaaaaatcaacaattattatttccaatgcattgaatatacaacgtttcata 9301992  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 34232060 - 34231979
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat 82  Q
    |||| ||||||||||||| ||||||||| || |||||| | ||| || ||||||  |||| |||||||| |||| |||||||    
T  34232060 ttaaccatcttaaatttaataattattctttaaaaaaaataactgttgcaattttcaatgtatttaatacacaacttttcat 34231979  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 29084005 - 29083890
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttacca-ttta 99  Q
    |||| |||| |||| ||||||||||||| |||||||| || ||||||||||||| |||||||||||||| |||| ||||||   |||| |||| | ||||    
T  29084005 ttaatcatcctaaacttagtaattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactatttta 29083906  T
Q  100 aagtgcttaaaaagta 115  Q
    ||||||||||| ||||    
T  29083905 aagtgcttaaagagta 29083890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 49362459 - 49362381
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaattttt 79  Q
    |||||||||  ||||||| ||||||||| |||||||| || |||||||||||||| |||| ||||||||||||||||||    
T  49362459 ttaaacatcccaaatttaataattattcttttaaaaagttaactattacaatttccaatgtatttaatatacaattttt 49362381  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 51351288 - 51351387
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||| ||||||||| |||||||| || | ||||| |||||| ||| ||||||||| ||||||||||||  |||| ||||  |||||||||||||||    
T  51351288 taaatttaataattattcttttaaaaagtttagtattataatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaa 51351387  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 26900109 - 26900019
Alignment:
Q  21 aattattcctttaaaaaattga-ctattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||| ||||||||| | | ||||||||||||  |||||||||| || | || ||||||||||||||||||||||||||||| |||||    
T  26900109 aattattcttttaaaaaagtcaactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaa 26900019  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 26143090 - 26143152
Alignment:
Q  20 taattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat 82  Q
    ||||||||| |||||||| |  |||||||||||||  ||||||||||||| ||||||||||||    
T  26143090 taattattcttttaaaaagtcaactattacaattttgaatgcatttaatacacaatttttcat 26143152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 45988310 - 45988215
Alignment:
Q  21 aattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaa---tttttcatataaaatttaccatttaaagtgcttaaaaagt 114  Q
    |||||||| ||||||||||  ||||||||||||||||||||| |||| | ||||   ||||| |||||| ||||||||| |||| | ||||||||||    
T  45988310 aattattcttttaaaaaatcaactattacaatttctaatgca-ttaacacacaacttttttttatataatatttaccatctaaaatacttaaaaagt 45988215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 52249338 - 52249440
Alignment:
Q  12 aaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaaa 111  Q
    ||||||| ||||||||| |||||||| || ||||||||||| ||||||  ||| ||||||||| ||||  || | || |||  | |||||||||||||||    
T  52249338 aaatttaataattattcttttaaaaagttaactattacaatctctaatatattcaatatacaactttttttaaataacttattaattaaagtgcttaaaa 52249437  T
Q  112 agt 114  Q
    |||    
T  52249438 agt 52249440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 47638925 - 47639005
Alignment:
Q  30 tttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    |||||||| || ||||||||||||| ||||||| | |||| ||||||||||||| | || |||| | ||||| ||||||||    
T  47638925 tttaaaaagttaactattacaatttttaatgcactcaatacacaatttttcataaagaacttactaattaaaatgcttaaa 47639005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 35177908 - 35177813
Alignment:
Q  14 atttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaa 109  Q
    ||||| ||||||||| |||||||| || | ||||| ||| |  |||||||||| ||||||||||||  |  ||||||||| |||| ||||||||||    
T  35177908 atttaataattattcttttaaaaagttaaatattataatattcaatgcatttagtatacaattttttcttaaaaatttactattttaagtgcttaa 35177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 11132660 - 11132556
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaat---ttaccatttaaagtgctt 107  Q
    ||||||||| |||||||  || ||||| || |||||||||||||  |||| ||| |||| |||| |||| ||| ||||    ||||||||||||||||||    
T  11132660 taaatttagcaattattatttcaaaaagttaactattacaattttcaatgtattgaataaacaactttttataaaaaaaaaattaccatttaaagtgctt 11132561  T
Q  108 aaaaa 112  Q
    |||||    
T  11132560 aaaaa 11132556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 40673445 - 40673543
Alignment:
Q  11 taaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaa 109  Q
    |||||||| | ||||||| |||||||| |  ||||||||||||||||||  ||| |||| || | ||||| |  |||| ||| ||||||||||||||||    
T  40673445 taaatttaatcattattcttttaaaaattcaactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 47040105 - 47040052
Alignment:
Q  30 tttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcata 83  Q
    ||||||||||| | ||||| ||||| ||||||||||| ||||||| ||||||||    
T  47040105 tttaaaaaatttattattataatttttaatgcatttagtatacaacttttcata 47040052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 62630 - 62492
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaa 100  Q
    |||| ||||| | ||||||||||||||| |||||||| |  |||||||| ||||  |||||||| |||| | ||||||| ||  |||| |||| ||||||    
T  62630 ttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttactatttaa 62531  T
Q  101 agtgcttaaaaagtaccccgaaaacactctataacattt 139  Q
    |||||||||| ||||||||| | ||||||  ||||||||    
T  62530 agtgcttaaagagtaccccggagacactcgttaacattt 62492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 20330 - 20245
Alignment:
Q  24 tattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcatataaaatttaccatttaaagtgcttaaa 110  Q
    ||||| |||||||| || |||||||||||||| |||||||| |||| |||| |||||||| |||| ||| |||||||||||||||||    
T  20330 tattcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttcata-aaaacttatcatttaaagtgcttaaa 20245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1066 - 1147
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat 82  Q
    |||| |||| |||| ||||||||||||| ||| ||||||  ||||||| |||||| |||||||| |||| | ||||||||||    
T  1066 ttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcat 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25079 - 25189
Alignment:
Q  1 ttaaacatcttaaatttagtaattattcctttaaaaaattgactattacaatttctaatgcatttaatatacaatttttcat-ataaaatttaccattta 99  Q
    ||||||||| | ||||||  ||||||| |||||||||||  |||||||||||||  |||||||| | ||  |||||||| || | |||| |||| |||||    
T  25079 ttaaacatccttaatttaacaattatttctttaaaaaatcaactattacaattttcaatgcattgattactcaattttttataaaaaaacttactattta 25178  T
Q  100 aagtgcttaaa 110  Q
    || ||||||||    
T  25179 aaatgcttaaa 25189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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